UFO03928.5prime Sequence
1135 bp (1021 high quality bases) assembled on 2009-02-13
> UFO03928.5prime
CAGTCGACATGACGCGATCTTCGCCAGCTTGGTGTGCTGGCCAGGCCTGG
CTCGTCTGGCTTTTGGCATCCATCTGGATACGCACGTGTCTCGCGCAATT
TGCAGTCTCCTCGTCCTCCGCCGGCGGAGCTGTTGCCTCCGCCGGTGGCG
TCACTGTGGTGGCCCAGCTGCCCGGTTTCGGAGTTATCAATGGACTGATC
AATGCCATGCACAACAACAACCGCTTCAACCAGCAGCCGCAGTTCGAGAG
ACTGCAGCAAGGAAGGCCGGGGATGGGTCCGAATCGAGGAGGAATGCACA
GACCAGGATTTGCACCACCCAACCGTCAGCAACCGACGCCTCCTGGCTGG
CCACCCGGCTGGCAGTGGGGAGCCGGTGGAAATCAGAATCAACCCGGATT
TGACTGGGTTCAAACAGGATTTGCACCAGGCTGGAATGGAGGTGGAGGGC
AAGGACCAGGATGGAATGGTCCAGGATGGAACGGAGGCGGTGGAAGAGGA
CCTCCACCAAGACCAGGTTTTAACGGCGGCGGACCACCGCCGCCAAGACC
AGGATGGAACGGCGGCGGGCCACCACCACCGATGCCAGGCTGGAATGGAG
GAGGGCCACCGCCACCAAGGCCAGGATGGAATGGCGGAGGACCTCCGCCA
CCAAGGCCAGGCTGGAATGGAGGGATGGAACAGGAATGGGATAACTATCC
ACGCCTCCCCGATCAGCCGGATCCCAATGATCCAAACACGAATTGGAATC
CAGATAATGAGTCTAGCACCACTCCACAAACGCCAATACCAGGACCCATC
TTTCCAACGACAACACCTAAGCCAGAGCCCACCTTTCCCACGATCCAGCC
ACGTCCAACCGCTCAGCCAACGAAGATACGCTCATAATAGGAACCAATCG
ACCGCCGTTGGTGCCGCCCCATAATCCGGATCCACCCACGCCCACTTTCC
CACTTGATCGTGCCGAGCATTGCCAACCATTGACGACTCTCCGAAATCGT
GCTATTATAATTCCCAGCTCTAGCAATATATCATGTGCCCAACCCGGAGG
TCCCTCAATTCCAACTGAATGTGAGACGAAGGCAGCTTCTAACCATTCGA
TGGCGCGCGGTCAAGTAATGTCTAATCTAATCTAT
UFO03928.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7016-RA | 1286 | CG7016-RA | 49..1135 | 7..1081 | 5025 | 98.3 | Plus |
| CG7016-RA | 1286 | CG7016-RA | 578..712 | 500..634 | 330 | 83 | Plus |
| CG7016-RA | 1286 | CG7016-RA | 542..676 | 536..670 | 330 | 83 | Plus |
| CG7016-RA | 1286 | CG7016-RA | 542..643 | 572..673 | 210 | 80.4 | Plus |
| CG7016-RA | 1286 | CG7016-RA | 614..715 | 500..601 | 210 | 80.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24862979..24864065 | 7..1081 | 4705 | 98.1 | Plus |
| 3R | 32079331 | 3R | 24863472..24863606 | 536..670 | 330 | 83 | Plus |
| 3R | 32079331 | 3R | 24863508..24863642 | 500..634 | 330 | 83 | Plus |
| 3R | 32079331 | 3R | 24863472..24863573 | 572..673 | 210 | 80.4 | Plus |
| 3R | 32079331 | 3R | 24863544..24863645 | 500..601 | 210 | 80.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:38:32 has no hits.
UFO03928.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:43 Download gff for
UFO03928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7016-RA | 41..1147 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:57 Download gff for
UFO03928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7016-RA | 42..1148 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:19 Download gff for
UFO03928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7016-RA | 42..1148 | 1..1092 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:19 Download gff for
UFO03928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24862972..24864078 | 1..1092 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:57 Download gff for
UFO03928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20688694..20689800 | 1..1092 | 97 | == | Plus |
