UFO03930.5prime Sequence
1113 bp (992 high quality bases) assembled on 2009-02-13
> UFO03930.5prime
CAGTCGACATGTCCAGCAACAACACGGACACTGGGGACACCACCGTCATG
GCGACGGCTACCTCGGTGCAGAACGATGTCGAGGCCGGCGTAGATGAGCA
ATTGCCTCGAGAATCGCTGATAACCACTGCAGTCAGTTTTCTACAAAACA
CCAAGGTGCGCCACACGACACTTATCCAGAAGCAGCAGTTCCTACGGTCC
AAAGGTCTCACCGCTCACGAAATTCAGCTGGCCTGTGAACGGGCCGGCGT
TTTCACCCAAGACCCCAACAAGCCCAATCCGAATCCGAACACCGTCATTA
GCATTGGATCCCAATTGCACGCGCTGCAGCCGCAGCCGACTGTCTTGGGC
CGGATCAGGGAAATCATCCATTCGGCAGCCCTGTTCAGCGGAGTCGTCTA
CGCAGTCTACATCTTCTGGAAGCAATACATTGCGCCCTACCTGTTCGGCA
AGTCCAAGAAGAAGGCGGTCGATGAAGTCCTGGACGACATAGACAAGAAG
GTAGAGACCCGCACCAACGACCTCAACAAGGAGATTTTGGCGGTCAGGGA
TCTGATCACCACACAGCAAAGGGAACACGCCCAGCAGCTGAACCGCGAAT
TTAGTAACTTCCGTAGCGATCTGGATGCCATTAAGGGCCTGCTTTTGAAC
CGAAAAACAGTTCGCCGGCCCTGTGGCTCCGATCGCAGTGCCATCCATTC
CCGCCTGGCAATTGGCCGGCTCACCGCATCACCATCACCGGCACAGCGGG
TCGGACGACAACGAGAAGGGCGATGATGCTGGATCCGGGTCTGGCTCGTC
GGAGACAGAGTGGTCACCAAGAATAGTGACTCCAGCTTGGAGATCATGGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGGTAAGTGTCATA
ATCATAATCATATCATATCATAATCACAACTAGCCTAGGGATCCTGGTCA
TGACTAGTGCTTGATTCTCACCATTAAAAACGCTCGGCGCAACCGACCGT
TCTGACACAATTCAGATGGAGTTCTTGAGTCATTACTGATCTATCACGAG
GTCCAGCGAACCTCGATATCATACGCCCCGGCCTGCCATCGATTCGCAGT
ACTGTTTGTATTT
UFO03930.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex14-RA | 1249 | CG4289-RA | 135..974 | 9..848 | 4155 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20779676..20780103 | 421..848 | 2045 | 99.5 | Plus |
| 3L | 28110227 | 3L | 20779098..20779405 | 115..422 | 1525 | 99.7 | Plus |
| 3L | 28110227 | 3L | 20778933..20779047 | 9..123 | 560 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:07:57 has no hits.
UFO03930.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:42 Download gff for
UFO03930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4289-RA | 139..981 | 9..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:53 Download gff for
UFO03930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex14-RA | 135..977 | 9..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:49 Download gff for
UFO03930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex14-RA | 135..977 | 9..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:49 Download gff for
UFO03930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20778933..20779043 | 9..119 | 100 | -> | Plus |
| 3L | 20779103..20779405 | 120..422 | 100 | -> | Plus |
| 3L | 20779678..20780116 | 423..860 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:53 Download gff for
UFO03930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20772033..20772143 | 9..119 | 100 | -> | Plus |
| arm_3L | 20772203..20772505 | 120..422 | 100 | -> | Plus |
| arm_3L | 20772778..20773216 | 423..860 | 97 | -> | Plus |
