UFO03933.5prime Sequence
1148 bp (1017 high quality bases) assembled on 2009-02-13
> UFO03933.5prime
CAGTCGACATGAAGCCAAAGCAGAAGATTTCCGTAGAGCCGCTATTGCTA
GTCGCAATTCTCATCGGAGTTCTGGTAGCCGCCACCCACGCTCAAGATCA
GAAATCGGTGAAACCATCGGCGGCAGCGCCATCAGCAGCAGCTTCTCGGC
CCCATGATGAAATCTATATCGACGATGATAGCATCGAGGGATCCGGCGGA
CGCGGCGGTATACACGAAGATCTAGAGAAAGATCCGGACTATTCTGGCTC
CGGCTTTGGACCCGATGACGAGGACGCCGAACCCGATCAGCATTCGCACA
GTTCGCACAACACGCGCATCTCGCAGAGCAGCAACTCCGGCATAAACACG
GGCGCAGGTGGCAGCAACGTGCACGAATTGGACCCCAATACGAACGTGAA
TAGCCAGCCCTCCGACACAAAGGGCATCGATCACAGGCCCAACGGCAACG
AAGTGGTCATCATGAGCGAGGACGATCGCACGTCGAGCTTCTTCTCGCAG
CCCGGAATTCTGGCTGCTGTCATTGGCGGTGCCGTCGTTGGCCTGCTCTG
CGCCATACTCGTGGTCATGTTCATCGTGTACCGCATGAGGAAAAAGGACG
AGGGATCCTATGCGCTGGACGAGCCAAAGAGATCGCCGGCCAACAATTCG
TATGCGAAAAATGCGAATAACCGCGAGTTCTACGCCGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAA
CAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTC
CAAGCGAGCTCGATATCAATTACGCCCCCGCCCTGCCCCTCATCGCAGTA
CTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCATCACAAACGGC
ATGATGAACTGAATCGGCAGCCGGCATCAGCACCTGTCCGCCTTGGCGTA
TTACATTTGCCATGGGTGAAACGGGGCGAAAAGATTGTCATTTGGCCACG
TCTAATCAACTGGTGCCTCACCCAGGAATGCTGAACGAAACAATTTCC
UFO03933.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sdc-RB | 1985 | CG10497-RB | 359..1036 | 9..686 | 3375 | 99.9 | Plus |
| Sdc-RG | 2944 | CG10497-RG | 195..780 | 101..686 | 2915 | 99.8 | Plus |
| Sdc-RD | 1869 | CG10497-RD | 337..677 | 9..349 | 1705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21394566..21394736 | 686..516 | 855 | 100 | Minus |
| 2R | 25286936 | 2R | 21394878..21395045 | 516..349 | 825 | 99.4 | Minus |
| 2R | 25286936 | 2R | 21399175..21399313 | 348..210 | 695 | 100 | Minus |
| 2R | 25286936 | 2R | 21412311..21412421 | 209..99 | 555 | 100 | Minus |
| 2R | 25286936 | 2R | 21480091..21480183 | 101..9 | 465 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 23:13:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dfun\Isfun-1 | 928 | Dfun\Isfun-1 DFU309320 928bp Derived from AJ309320 (Rel. 68, Last updated, Version 1). | 458..506 | 683..635 | 110 | 69.4 | Minus |
UFO03933.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:40 Download gff for
UFO03933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-RB | 351..1028 | 9..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:20:44 Download gff for
UFO03933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-RB | 359..1036 | 9..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:53:46 Download gff for
UFO03933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-RB | 359..1036 | 9..686 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:53:46 Download gff for
UFO03933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21394566..21394735 | 517..686 | 100 | <- | Minus |
| 2R | 21394878..21395045 | 349..516 | 99 | <- | Minus |
| 2R | 21399175..21399313 | 210..348 | 100 | <- | Minus |
| 2R | 21412311..21412418 | 102..209 | 100 | <- | Minus |
| 2R | 21480091..21480183 | 9..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:20:44 Download gff for
UFO03933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17282071..17282240 | 517..686 | 100 | <- | Minus |
| arm_2R | 17282383..17282550 | 349..516 | 99 | <- | Minus |
| arm_2R | 17286680..17286818 | 210..348 | 100 | <- | Minus |
| arm_2R | 17299816..17299923 | 102..209 | 100 | <- | Minus |
| arm_2R | 17367596..17367688 | 9..101 | 100 | | Minus |
