UFO03934.5prime Sequence
1122 bp (1008 high quality bases) assembled on 2009-02-13
> UFO03934.5prime
CAGTCGACATGTCGCAAGCAAAAAAGGCCAAGCGACCCTCGGGCCTTTCG
AAGGATGAAACTTGGAAGAAACTGGGCTTTCTACCCGCGTTCAAGGGCGG
CAAGGATGGGGAGCCGAAGAAGTACCGAGCGCTGTGCACCCACTGTCGGA
AATGCCAATCAAACACCAGCATAGACAGGCTGATTATCCATAGGAAGTCA
TGTCTCAAGTTCCGGGAGGATCTAACCGCTGAATTCGGTATTAAGGTGGA
GGCTACGGACGCCGCTCCGGCAGAACAGAGCTCTTCCGGCTCCACAATTG
ACTTCACTTCGAATATTCTACTGGACAAACTGATCGACGAGGATGATAGC
AGTGCACGCAATCAGGAATCCAACTTGGTGAGCTACTTGACCGATCTGGA
TCAACTGGTGATCCCGTCATCCGACGCCAATCGACTGCAGAAGGATCTGA
TCAAGGCGGAAACGGAGTATCTGGTGGTCAAATCCGAGTACTTTACCAAG
ATGAACGAGATATCCGAACTGAAACGCACCGTCACCTTGTTGGAGGCGAA
AAAGACACAGCTGGAGATCGCCAAACTGCGTGCTGAATGCGAGGCAAGCT
TTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCAT
AATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATG
ACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCG
TTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAAC
AGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCAT
CGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACAGGAAGCCATCAC
AAACGGCATGATGAACCTGAATCGCCAGCGCATCAGCACCTTGTCGCCTT
GCGTATATATTTGCCCATGATGAAACGGGGGCGAAGAATCTGTCCTATGT
CACGTTTAATCAACCTGGTGAAACTCATCAGGGATGGCTGAAACGATAAA
CATATTTCTCTATAACCCTTTAGCATAGGCCAGCTTTACGTAACCGCCAC
CTGCATATGTGTAGAAACTGCG
UFO03934.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ibf2-RA | 708 | CG9740-RA | 62..646 | 9..593 | 2925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9257789..9258190 | 593..192 | 2010 | 100 | Minus |
| 3R | 32079331 | 3R | 9258255..9258440 | 194..9 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:43:47 has no hits.
UFO03934.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:48 Download gff for
UFO03934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9740-RA | 15..618 | 3..602 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:37:42 Download gff for
UFO03934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9740-RA | 56..659 | 3..602 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:04 Download gff for
UFO03934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ibf2-RA | 56..659 | 3..602 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:04 Download gff for
UFO03934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9257776..9258188 | 194..602 | 99 | <- | Minus |
| 3R | 9258256..9258446 | 3..193 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:37:42 Download gff for
UFO03934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5083498..5083910 | 194..602 | 99 | <- | Minus |
| arm_3R | 5083978..5084168 | 3..193 | 98 | | Minus |
