UFO03935.5prime Sequence
1147 bp (1022 high quality bases) assembled on 2009-02-13
> UFO03935.5prime
CAGTCGACATGACACCCTTTGATGACTTTGTCTATCTAATCAATCATGTG
CTGCTGGGCGAGGAGCCGACCATCGAGGACTTCATACTGCTGGTAGGCAC
CCTGGTGGCATTTATAGCATTTATCCTTTGGTGCTGCTTCCCCATACAAC
CTAAGCAGGAGCGTGGCCCCCATCGCCAATTCACCTGCAAGATTATCCAG
AATCCCATTAAGGCCTTTGACGCCTCCACCAGCACCGACGACGCACCCAT
TCCGGGAGGTGGCTCCGGAATTGGCAGCTCCATGTCCAACATGCAGTACA
ATGGTAGCGGAAGCTATAGCAAGAATGGTACTGTTGCCATGCACAATTAC
TACGTTAAGAACGGTCACCATTGCTGCACCGCAAGCTTTCTAGACCATTC
GTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATA
ATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGA
TTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATC
CAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCG
AGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTG
TAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGAT
GAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATAT
TTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTT
TAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACA
TATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACAC
GCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGTAT
TCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTA
CACAGGTGAACACTATCCATATTCACAGCTCACGTCTTTTCATTGCCATT
ACGAATTTCGGAATGAACATCATTCAGGGCGGCAGATGTGAAATAAAGCC
GGAAAATAACCTTGTGGCTTTAATTTTTTTTTTTTACGGGTCTTTAA
UFO03935.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17163-RA | 1716 | CG17163-RA | 581..952 | 9..380 | 1860 | 100 | Plus |
| CG17163-RB | 1451 | CG17163-RB | 207..575 | 9..380 | 1805 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 23081635..23081861 | 380..154 | 1135 | 100 | Minus |
| X | 23542271 | X | 23081916..23082003 | 155..68 | 440 | 100 | Minus |
| X | 23542271 | X | 23082070..23082129 | 68..9 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:10:05 has no hits.
UFO03935.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:47 Download gff for
UFO03935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17163-RA | 572..954 | 1..384 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:05:01 Download gff for
UFO03935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17163-RA | 573..955 | 1..384 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:14 Download gff for
UFO03935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17163-RA | 573..955 | 1..384 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:14 Download gff for
UFO03935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 23081635..23081859 | 156..380 | 100 | <- | Minus |
| X | 23081916..23082002 | 69..155 | 100 | <- | Minus |
| X | 23082070..23082136 | 1..68 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:05:01 Download gff for
UFO03935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| XHet | 60734..60820 | 69..155 | 100 | <- | Minus |
| XHet | 60888..60954 | 1..68 | 95 | | Minus |
| XHet | 60453..60677 | 156..380 | 100 | <- | Minus |
