UFO03938.5prime Sequence
1171 bp (1046 high quality bases) assembled on 2009-02-13
> UFO03938.5prime
CAGTCGACATGAGTGAATCCGCACCGGAAACTGTGCCAGCCAAGAAGCCG
GCAAAGGCCAAGAAGGCGGCAAAGCCGGAGAACAGCATACCACGCGGCCA
GCCCAAGTCGAACCGGCCGTGGAAGACGCCCAAGCAGAAATTTAGCAAGA
TTAAGAAGACCGTTAACCGACTGTCCTTCGAAAAGAAGACGGCCCTGCGC
GACGAGCTGCGCTACATCAAGGAGCGCTCCAAGGAGATCAAGGACAAGCG
CAAGGAGGATGCCGTCCAAAAGCACCAGCGCCGCGTGGAGAATGCCGAGC
GCCGGCTGGCGAACGAGCGCCGCTCGGAGGTCGTCCAGGTCATCAAGAAT
CCCGCCAAGCTGAAGCGCATGAAGAAGAAACAGATGCGCATGATCGAGAA
GCGGGACGTCAGCCAGGTGAAGGTGGTCGCAAGCTTTCTAGACCATTCGT
TTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAAT
CATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATT
CTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCA
GATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAG
CTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTA
ATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGA
ACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTT
GCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTA
AATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATA
TTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGC
CACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGTATTC
ACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAACGGTGTAACA
GGGTGAACACTATCCATATCACCAGCTTCACCGTCTTTTCATTGCCATAC
GAAATTCGGAGTGATCATCATCAGGGGGCCAAGACATGGTAATAAGCTGA
TAACTGGGCTATTTTCGTTAC
UFO03938.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14210-RB | 559 | CG14210-RB | 81..500 | 9..428 | 2100 | 100 | Plus |
| CG14210-RA | 567 | CG14210-RA | 81..500 | 9..428 | 2100 | 100 | Plus |
| CG12788-RC | 1704 | CG12788-RC | 1609..1704 | 428..333 | 480 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19616470..19616758 | 140..428 | 1445 | 100 | Plus |
| X | 23542271 | X | 19616276..19616406 | 9..139 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:17:48 has no hits.
UFO03938.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:37 Download gff for
UFO03938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14210-RA | 64..489 | 1..428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:08 Download gff for
UFO03938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14210-RA | 75..500 | 1..428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:56:25 Download gff for
UFO03938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14210-RA | 75..500 | 1..428 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:56:25 Download gff for
UFO03938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19616270..19616406 | 1..139 | 97 | -> | Plus |
| X | 19616470..19616758 | 140..428 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:08 Download gff for
UFO03938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19510303..19510439 | 1..139 | 97 | -> | Plus |
| arm_X | 19510503..19510791 | 140..428 | 100 | == | Plus |
