UFO03939.5prime Sequence
1156 bp (1039 high quality bases) assembled on 2009-02-13
> UFO03939.5prime
CAGTCGACATGGAGCCCAACGATGAGGTGGTGGAGCGACAGAAGCTGGTG
AACGACGTGGAAACGGAGGAGGAAGCCCAAAGCGCACCGAAATCGGCCAC
ACCCGCCTCGCCCGCCGTTCCGAATATCAAAATCAAAGGCATATCCAGCG
GCGAGACCACTCGCAGCAGAAACTCGGCCTCCTGCTCCATCGAGAGGACG
ATATCCGAAAAGGAGAAGGACAAGAGCCAGGGCCAGGGTCAAGCGGCCAC
CAAGGTGACCTATGTGAATGAGCGCCGGCCACGCCCGCAGGCGCACGGCG
GCAGTGGCGGGGGTGCCGGCGACGAAAGATTCGAGTTCAAGACCCGGCCG
CGCAAACTCCTGAAAGATCGTGATGAGTTGGAACCCACCACCAACAGTGC
CAACAGCCTGAACGCCATCACCTTGGTGAGCAGCGAGTGGCTAGCACCTG
ATCCCACAGCCACAGACAATCACAACACCCCCAAGAACAACAACAACGAT
AGCACGAAACCCAACAATAACAATCAGCACAGCAATAGCAATCAGAACAC
ACCGCGATTGCAGCGCCGCAAGAATCCCACAGCGTCGATGCCAAACGCCA
GTGCCCACAGCGATAAGTTCGACGATCGTCCAATAAAACATCATTCCTTT
GTCTCCGAAGTTCCCGATGTTAAGCACATGGAAAGAGCTCTCCTCGGACT
GCTGGACGACTTTCACTCCGGCAAGCTGAGGGCATTCGGCTCCGGCTGCA
CAATGGACCAGATGACCAAGATTCGCGAGCAGCAAGAGAGCCTGGGCCAA
ATTGCATTTCGAACTGGCTGCCGCCGAGGAGGATTCGCTGGAGCACGGCA
ACGAGTTCAACACCAACAAGGCGCAGAGAACATGCTGCAGCTGATGCAGC
GCCTGAACAGCTATCCATCTCCATCGAGCAGCTGCAGACGAGCCACACGG
GTCTCGCAAGCTTTCTAGACATTCGTTTGGCGCGCGGGCCCAGTAAGTGG
TCATATCATAATCATAATCATAATCATAATCACCACTAGCTAGGAGAATC
CTGTCATGACTGTGCTGAATCCTCACAAATAAAAAAACGCCCGGCGGCAA
CCGAGCGTTCTGGAACAATTCAGAAATGATCGAAGTCATACATGAATCAT
CAAACA
UFO03939.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10874-RA | 1583 | CG10874-RA | 124..1071 | 9..955 | 4655 | 99.6 | Plus |
| CG10874-RD | 1586 | CG10874-RD | 124..1074 | 9..955 | 4615 | 99.3 | Plus |
| CG10874-RC | 1292 | CG10874-RC | 124..481 | 9..366 | 1790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2190706..2191080 | 739..365 | 1875 | 100 | Minus |
| 2L | 23513712 | 2L | 2191850..2192090 | 366..126 | 1205 | 100 | Minus |
| 2L | 23513712 | 2L | 2190426..2190644 | 955..738 | 935 | 98.2 | Minus |
| 2L | 23513712 | 2L | 2192147..2192263 | 125..9 | 585 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 23:18:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2474 | 386..541 | 201 | 62.7 | Plus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2492..2681 | 355..541 | 176 | 57.6 | Plus |
UFO03939.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:36 Download gff for
UFO03939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10874-RA | 103..1065 | 1..964 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:49 Download gff for
UFO03939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10874-RA | 117..1079 | 1..964 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:56:56 Download gff for
UFO03939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10874-RA | 117..1079 | 1..964 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:56:56 Download gff for
UFO03939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2190426..2190643 | 739..955 | 98 | <- | Minus |
| 2L | 2190707..2191078 | 367..738 | 100 | <- | Minus |
| 2L | 2191850..2192090 | 126..366 | 100 | <- | Minus |
| 2L | 2192147..2192270 | 1..125 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:49 Download gff for
UFO03939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2190426..2190643 | 739..955 | 98 | <- | Minus |
| arm_2L | 2190707..2191078 | 367..738 | 100 | <- | Minus |
| arm_2L | 2191850..2192090 | 126..366 | 100 | <- | Minus |
| arm_2L | 2192147..2192270 | 1..125 | 97 | | Minus |
