UFO03945.5prime Sequence
1088 bp (1006 high quality bases) assembled on 2009-02-13
> UFO03945.5prime
CAGTCGACATGGGTCCCTATGCCCTCCGGAAAATTCCCTTTGTCGGCTAT
GTGGTAATCAGCAAGCGTCTATATGATAAACAACCGCTACCAGGTCAGAA
GGAACATACAATTCAAGCTGATCTAACGCTACCCAAGTACCTATTACGAG
AACGACATCCGTTGTTCGGGCGCAGCTACAAGCAACGCATCCAATTACCG
AAGATGATTTCCACATCTCTTAGTCAAGCAGACGAGAAATTCTTGGAAGC
TACTGCCAAGCTTCGCAGCACTGCTAACTACTACAAGATCCGGAGCAAGC
TGCACACCACCACACAGACGCTAGAACAAAAAGAGGACGATGTGCGACAG
TCGGTGCTTACCGGTCGTACGCCGCAGTTCATGAAGGAAACAATAATCCC
GGATCTATATAAAGATCTCTTAGACGAAGAGGACATCGAGAAAAATATAA
TGAACCCAGCAGAGGAAGTTGGTCCTGCCAAAATGCGCAAGAAAAAATTT
AATTCAAACGGTCACAAAACGGGAAATGCAGTAGGGAAAGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCT
GAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGA
GTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCA
GTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAA
CGGCATGATGAACCTGATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCG
TATATATTTGCCCATGGTGAAACGGGGCGAGAGTTGTCCATATGCACGTT
TAAATCAAACTGGTGAACTCACCCAGGATGCTGAACGAAAACATATTCTC
ATAACCCTTTACGGATAGCAGTTTCACGTAACACGCCCATCTGCACAATG
TGTAGAACTGCGAATCGTCTGCAATCATCGAGCGATGA
UFO03945.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11076-RE | 1230 | CG11076-RE | 437..967 | 9..539 | 2655 | 100 | Plus |
| CG11076-RD | 1192 | CG11076-RD | 399..929 | 9..539 | 2655 | 100 | Plus |
| CG11076-RA | 1265 | CG11076-RA | 472..1002 | 9..539 | 2655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 1029974..1030504 | 539..9 | 2655 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:43:43 has no hits.
UFO03945.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:35 Download gff for
UFO03945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11076-RA | 468..998 | 9..539 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:37:40 Download gff for
UFO03945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11076-RB | 399..929 | 9..539 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:02 Download gff for
UFO03945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11076-RA | 472..1002 | 9..539 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:02 Download gff for
UFO03945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 1029974..1030504 | 9..539 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:37:40 Download gff for
UFO03945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1050600..1051130 | 9..539 | 100 | | Minus |
