Clone UFO03948 Report

Search the DGRC for UFO03948

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:39
Well:48
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO03948.5prime Sequence

1077 bp (922 high quality bases) assembled on 2009-02-13

> UFO03948.5prime
CAGTCGACATGCAGCGTAAATTACACAAAAATATTCAGGCAACTGGACAT
CTGAGGCAATCTGGCATGGCGATGCGACACTTGACAGCTGCCACAATGGG
CGTATTGCTGCCAGTGGGCGTGCTGGGATTTGTGGTGCTGATGCAATTGA
TGGCATCGGTGCGTGGACATGGTCGACTAATGGATCCACCGGCCAGGAAT
GCCATGTGGCGTTTTGGCTATCCCAATCCGGTGAACTACAATGACAATGA
GCTCTTCTGCGGCGGCTATGCGGTGCAATGGGAGCAAAATAAGGGACGTT
GCGGTATCTGCGGCGATGCCTACCACGTCAAATCGCCCAGGCCGCACGAG
GCTGGTGGTCAATACGCCAAGGGCATCATCTCACGCTACTATACCGCCGG
TCAGACGATCGATGTTGAGGTGGAACTGACTGCCAATCATTATGGCCGTT
TCGAGATGTTCCTCTGTCCGAACAACAATCCGCGACAGGAGGCGACACAG
CAGTGCTTCGATCGTTATCCGTTGCTCATTTCGGGCAGTCGAGAGCATCG
GTATCTGATACCGCGTGATGCGAAAAAGAAGGATATATTCCGATACAAGG
TACGTTTGCCGCCATATGTCACCTGCACACAGTGCGTACTCCAATGGACC
TACTATACGGCCAATATGTGGGGCACCTGTGCCAATGGCACCGAAGCCGT
TGGCTGCGGCAAGGCAGAGACATTCCGCAATTGTGCGGATGTGGCGATCG
TTTCGAATACCGGCGGCGGTATTCCACCGCCTTTCGTGAATAACAAATCG
CCATACCTGCTCTATTATCGAGATTATCGTGCTCCGGCGGACACAACATC
TTTCCACTTATTGTGCGCATGCACGCGGCATGCACGCAACAAGCAGGCTA
TGCCGCCTGTCGTGCAGCTTTCTAGATCATTCGTTTGCGCTGGGTCCAGG
TTAGTTGTCATATCATATCATATCTAATCATATCCCAGCTAGCCTAGGAG
ATCTGGTCAGACTGCTGCTTGATTCTCCACATAAAGCCGGGCGGCACGAC
GGTCTGAACAATCGAATGGATTCTGAG

UFO03948.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG42749-RB 1407 CG42749-RB 225..1130 10..909 4365 99.2 Plus
CG42749-RC 1412 CG42749-RC 225..1083 10..867 4270 99.9 Plus
CG42749-RD 1488 CG42749-RD 301..1159 10..867 4270 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5301464..5302059 122..717 2980 100 Plus
X 23542271 X 5302118..5302271 715..867 720 99.4 Plus
X 23542271 X 5301319..5301404 37..122 430 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:26:14 has no hits.

UFO03948.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:38 Download gff for UFO03948.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15786-RA 201..1115 2..909 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:11 Download gff for UFO03948.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42749-RB 216..1130 2..909 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:27 Download gff for UFO03948.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42749-RB 216..1130 2..909 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:27 Download gff for UFO03948.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5301321..5301404 39..122 100 -> Plus
X 5301465..5302059 123..717 100 -> Plus
X 5302121..5302271 718..867 99 -> Plus
X 5302571..5302594 868..889 91 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:11 Download gff for UFO03948.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5195354..5195437 39..122 100 -> Plus
arm_X 5195498..5196092 123..717 100 -> Plus
arm_X 5196154..5196304 718..867 99 -> Plus
arm_X 5196604..5196627 868..889 91 == Plus