UFO03948.5prime Sequence
1077 bp (922 high quality bases) assembled on 2009-02-13
> UFO03948.5prime
CAGTCGACATGCAGCGTAAATTACACAAAAATATTCAGGCAACTGGACAT
CTGAGGCAATCTGGCATGGCGATGCGACACTTGACAGCTGCCACAATGGG
CGTATTGCTGCCAGTGGGCGTGCTGGGATTTGTGGTGCTGATGCAATTGA
TGGCATCGGTGCGTGGACATGGTCGACTAATGGATCCACCGGCCAGGAAT
GCCATGTGGCGTTTTGGCTATCCCAATCCGGTGAACTACAATGACAATGA
GCTCTTCTGCGGCGGCTATGCGGTGCAATGGGAGCAAAATAAGGGACGTT
GCGGTATCTGCGGCGATGCCTACCACGTCAAATCGCCCAGGCCGCACGAG
GCTGGTGGTCAATACGCCAAGGGCATCATCTCACGCTACTATACCGCCGG
TCAGACGATCGATGTTGAGGTGGAACTGACTGCCAATCATTATGGCCGTT
TCGAGATGTTCCTCTGTCCGAACAACAATCCGCGACAGGAGGCGACACAG
CAGTGCTTCGATCGTTATCCGTTGCTCATTTCGGGCAGTCGAGAGCATCG
GTATCTGATACCGCGTGATGCGAAAAAGAAGGATATATTCCGATACAAGG
TACGTTTGCCGCCATATGTCACCTGCACACAGTGCGTACTCCAATGGACC
TACTATACGGCCAATATGTGGGGCACCTGTGCCAATGGCACCGAAGCCGT
TGGCTGCGGCAAGGCAGAGACATTCCGCAATTGTGCGGATGTGGCGATCG
TTTCGAATACCGGCGGCGGTATTCCACCGCCTTTCGTGAATAACAAATCG
CCATACCTGCTCTATTATCGAGATTATCGTGCTCCGGCGGACACAACATC
TTTCCACTTATTGTGCGCATGCACGCGGCATGCACGCAACAAGCAGGCTA
TGCCGCCTGTCGTGCAGCTTTCTAGATCATTCGTTTGCGCTGGGTCCAGG
TTAGTTGTCATATCATATCATATCTAATCATATCCCAGCTAGCCTAGGAG
ATCTGGTCAGACTGCTGCTTGATTCTCCACATAAAGCCGGGCGGCACGAC
GGTCTGAACAATCGAATGGATTCTGAG
UFO03948.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42749-RB | 1407 | CG42749-RB | 225..1130 | 10..909 | 4365 | 99.2 | Plus |
CG42749-RC | 1412 | CG42749-RC | 225..1083 | 10..867 | 4270 | 99.9 | Plus |
CG42749-RD | 1488 | CG42749-RD | 301..1159 | 10..867 | 4270 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5301464..5302059 | 122..717 | 2980 | 100 | Plus |
X | 23542271 | X | 5302118..5302271 | 715..867 | 720 | 99.4 | Plus |
X | 23542271 | X | 5301319..5301404 | 37..122 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:26:14 has no hits.
UFO03948.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:38 Download gff for
UFO03948.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15786-RA | 201..1115 | 2..909 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:11 Download gff for
UFO03948.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42749-RB | 216..1130 | 2..909 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:27 Download gff for
UFO03948.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42749-RB | 216..1130 | 2..909 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:27 Download gff for
UFO03948.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5301321..5301404 | 39..122 | 100 | -> | Plus |
X | 5301465..5302059 | 123..717 | 100 | -> | Plus |
X | 5302121..5302271 | 718..867 | 99 | -> | Plus |
X | 5302571..5302594 | 868..889 | 91 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:11 Download gff for
UFO03948.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5195354..5195437 | 39..122 | 100 | -> | Plus |
arm_X | 5195498..5196092 | 123..717 | 100 | -> | Plus |
arm_X | 5196154..5196304 | 718..867 | 99 | -> | Plus |
arm_X | 5196604..5196627 | 868..889 | 91 | == | Plus |