UFO03949.5prime Sequence
1117 bp (1013 high quality bases) assembled on 2009-02-13
> UFO03949.5prime
CAGTCGACATGAATCGCCTTTTTGGTCGTGGTAAGCCCAAGGAGCCGGGT
CCAAGTCTAAACGATTGCATCGCCGGGGTCGATGCCCGAGCAACAAACAT
CGAAGAGAAGATCAGTAATCTGGAGGCAGAGCTGCGCAAATACCGCGAAC
AAATGTCCAAGATGCGAGAAGGTCCTGCCAAGAACTCCGTGAAACAGAAG
GCCCTCCGGGTTCTCAAACAAAAGAAGGCCTACGAACAGCAGGCAGAATC
TCTGCGCAACCAGTCGTTCAACATGGAACAGGCCAACTATGCGGCGCAAT
CCTTGAAGGATACTCAGGCCACCGTGGCGGCCATGAAGGATGGAGTCAAG
CAGATGAAGACCGAGTACAAGAAGATCAACATCGACCAGATCGAGGACAT
CCAAGACGACATGGCTGATATGTTTGAGCAGGCGGACGAGGTGCAGGAGG
CACTGGGCCGCACGTACGGCATGCCTGAGGTGGATGACGACGACCTGCAG
GCCGAGTTGGATGCTCTGGGCGATGAGATTGCCTTGGACGATGACACCAG
CTATTTGGATGACGTGGTCAAGGCTCCGGAGGCGCCGAGTCGAGAGCCGG
GAGCTGACAGCATCGTCCCTGGAAAGAGCACCATTGAAACGGATGAGTTC
GGCTTGCCCAAGATTCCGACATCGCTGAAGACCACAGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAACGCCTCGGCGGCAACCGAGCGTTCTGAA
CAAATCCCAGATGGAGTTCTGAGGTCATTACTGGGATCTATCAACAGGAG
TCCAAGCGAGCTCGATATCAATTACGCCCCGCCCTGCCCCTCATCGCAGT
ACTGTTGTAATTCATTAGCATTCTGCCGACATGGAAGCCATCACAACGGC
ACTGATGAATCTGATCTCGCCGCCGCATCACCACCTTGTTCCCCTGCGAT
AAATATTTGCCATGGGAAACCGGGGGGCGAGAGTTGTCCTATTGGCCCGA
CTAATTCAACTGGGTGA
UFO03949.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps60-RB | 1100 | CG6259-RB | 240..925 | 1..686 | 3400 | 99.7 | Plus |
| Vps60-RA | 980 | CG6259-RA | 120..805 | 1..686 | 3400 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17620419..17620651 | 626..394 | 1165 | 100 | Minus |
| 3L | 28110227 | 3L | 17620728..17620894 | 396..230 | 835 | 100 | Minus |
| 3L | 28110227 | 3L | 17621096..17621253 | 234..77 | 775 | 99.4 | Minus |
| 3L | 28110227 | 3L | 17621308..17621386 | 79..1 | 365 | 97.5 | Minus |
| 3L | 28110227 | 3L | 17620298..17620359 | 686..625 | 310 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 23:13:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 3561..3670 | 305..413 | 115 | 57.3 | Plus |
UFO03949.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:31 Download gff for
UFO03949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6259-RA | 113..808 | 1..693 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:20:42 Download gff for
UFO03949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6259-RA | 120..815 | 1..693 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:53:45 Download gff for
UFO03949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps60-RA | 120..815 | 1..693 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:53:45 Download gff for
UFO03949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17620288..17620357 | 627..693 | 95 | <- | Minus |
| 3L | 17620419..17620649 | 396..626 | 100 | <- | Minus |
| 3L | 17620729..17620894 | 230..395 | 100 | <- | Minus |
| 3L | 17621101..17621252 | 78..229 | 100 | <- | Minus |
| 3L | 17621310..17621386 | 1..77 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:20:42 Download gff for
UFO03949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17613388..17613457 | 627..693 | 95 | <- | Minus |
| arm_3L | 17613519..17613749 | 396..626 | 100 | <- | Minus |
| arm_3L | 17613829..17613994 | 230..395 | 100 | <- | Minus |
| arm_3L | 17614201..17614352 | 78..229 | 100 | <- | Minus |
| arm_3L | 17614410..17614486 | 1..77 | 97 | | Minus |
