UFO03950.5prime Sequence
1117 bp (1008 high quality bases) assembled on 2009-02-13
> UFO03950.5prime
CAGTCGACATGATCACGGAAACTCTCCTGACGATCTGCGCGGCGGTGTTC
CTCTGCCTTTCGTATCGATATGCAGTGGGTCGACCCTCCGGTTTTCCACC
CGGTCCTCCAAAGATTCCGCTTTTCGGCAGCTACCTCTTCATGTTGATCA
TCAACTTTAAGTATCTGCACAAGGCGGCTCTGACCCTCAGTCGGTGGTAC
AAGTCGGATATCATTGGACTGCATGTGGGTCCTTTTCCGGTGGCCGTTGT
CCACAGTGCGGATGGAGTGCGCGAGATCCTCAATAATCAGGTGTTCGATG
GACGGCCGCAGCTTTTCGTGGCCGCCATGCGCGATCCCGGCCAAGATGTG
CGAGGGATCTTTTTCCAGGATGGCCCCCTGTGGAAGGAGCAACGTCGCTT
CATCCTGCGCTACTTAAGAGACTTTGGTTTCGGACGACGATTCGACCAAC
TGGAGCTGGTCATCCAGGAGCAGTTGAACGACATGCTGGATCTGATCCGC
AACGGTCCAAAGTATCCGCATGAGCACGAGATGGTGAAATCCGGAGGATA
TCGCGTGCTTCTGCCGCTGCTCTTTAATCCCTTCTCGGCCAACGCTCACT
TTTACATTGTCTACAATGAGTGCCTGAGTCGCGAGGAAATGGGCAAATTG
GTGAAGCTCTGCCAGATGGGCATACAGTTCCAGCGGAATGCGGACGACTA
CGGCAAAATGTTGAGCATTATACCGTGGATTCGGCACATTTGGCCCGAAT
GGAGTGGCTACAACAAGCTAAACGAGTCCAACCTATTCGTGCGGCAGTTC
TTTGCCGACTTTGTGGATAAGTATTTGGACAGCTACGAGAGGGTGTGGAG
CGCAACTTCATGGATGTCTACATAGCTGAATGCGCCGAGGTCCGGGCTAC
GTTTCATCGGGATCATTGATCATGGGCCTGTGACTTCTCCTTTCGCTCAC
TGCATCGGAGTGCAGCTATCGCTACTCGTCAGTATCTCATGCTATATCGC
AGTCTGCGGCGGGTCAGAACGAATCGACGAGGTGGTGGATGCGACATTGC
CCACTTGAGATCCAGACTTGCTTCTGCAGTCACATCCGTAGTCTGCCATC
GGATCTCTGTTCCTGAG
UFO03950.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp304a1-RA | 1716 | CG7241-RA | 33..1098 | 9..1053 | 4820 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12964518..12965221 | 353..1038 | 2755 | 96.7 | Plus |
| 3R | 32079331 | 3R | 12963977..12964230 | 102..355 | 1270 | 100 | Plus |
| 3R | 32079331 | 3R | 12963823..12963918 | 9..104 | 465 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:17:39 has no hits.
UFO03950.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:30 Download gff for
UFO03950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp304a1-RA | 18..1097 | 1..1057 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:01 Download gff for
UFO03950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp304a1-RA | 24..1103 | 1..1057 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:56:19 Download gff for
UFO03950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp304a1-RA | 24..1103 | 1..1057 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:56:19 Download gff for
UFO03950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12963814..12963916 | 1..102 | 95 | -> | Plus |
| 3R | 12963978..12964229 | 103..354 | 100 | -> | Plus |
| 3R | 12964520..12965221 | 355..1038 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:01 Download gff for
UFO03950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8789536..8789638 | 1..102 | 95 | -> | Plus |
| arm_3R | 8789700..8789951 | 103..354 | 100 | -> | Plus |
| arm_3R | 8790242..8790943 | 355..1038 | 97 | == | Plus |
