UFO03953.5prime Sequence
1087 bp (964 high quality bases) assembled on 2009-02-13
> UFO03953.5prime
CAGTCGACATGGACACGCCACGCCGCAAGCTAAGAAATTTGCACCTGGAG
AATGTCCAGAACAGCAGCACTCCCATCAACGTGCCGCCATCGCCGATGAT
GAAGACCCTGGGCCACGGCACTGGGATCCGGGTCTACCGCTTGGACCGCT
CGCCTCGTCTCGGCGAAATCCGCTCGCCCTGGGCCGTCAAGCGGATCACG
CAGAACATGCGGGTCAAGAAGGATACACTCTTCAACGAGCGAATTGTTCA
CGAGGCCGATATCCTGCGCAAACTGAAGCATCCAAACATCGTGGGATTCC
GTGGCGTTATCACCAATGACGAGGGCATCAACACACTGGCACTTGAAATG
TGCACCACTTCACTGGGCTCCATACTCGAGGAGCGACACGACGAGGATCT
GGGCCCGTTGCCGGCCAAACATACCTATAAGATGATCATGGACGTGGCCC
AGGCACTAGACTTTCTTCACAACGAAGCTCACCTCATGCACGGCGACCTT
AAGTCCTTTAATGTCCTGGTCAAAGGCGAGTTTGAGATTTGTAAGCTGTG
CGATTTTGGAGTCTCTCTTCCGCTGGACGAGCAGGGCGAGGTTAATTTCC
TAAAGAATCCCGGACTGCGCTATGTGGGAACTAACCTCTGGTGCGCACCG
GAGGTCATAGACGAAGTGGATGTTATTGACAGCAAGGCAGACATATTCAG
CTTTGGCCTGGTTATCTACGAAACCCTTGCTTTGGTGCCTCCACATACCT
TGGAGCTTGATGCAGCACTGGGAGAGGATATGGACAGTTCGCACGATTTA
CCCACCGACACGGACAAGCTGCAGTGCAAACAGTTGGACTTCTCCAGCGA
TGAAAACAAGAACGGACTACCTTCTGCATGGAGACACACAGACACGATAT
GAGTCAGATTATGACGAGAGATGATGAGAGAGAGAGAGGAGAGAGACGAT
GAGAGATGATGACCGAGAACGATTTCTCTTACTTACATGATACCTTCATC
GCTATGTACACGACCCCATGCAGTGCCTTCACCTACGCGCATACACTGCC
TCTGGAACTGTTTTACTGTGCCAATGCTCCCACGGAG
UFO03953.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8173-RA | 1643 | CG8173-RA | 213..1249 | 9..1015 | 4480 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17708288..17708648 | 628..268 | 1805 | 100 | Minus |
| X | 23542271 | X | 17709182..17709441 | 268..9 | 1300 | 100 | Minus |
| X | 23542271 | X | 17707962..17708213 | 878..627 | 1260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:24:16 has no hits.
UFO03953.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:13 Download gff for
UFO03953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8173-RA | 213..1155 | 1..940 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:11 Download gff for
UFO03953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8173-RA | 208..1150 | 1..940 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:39 Download gff for
UFO03953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8173-RA | 208..1150 | 1..940 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:39 Download gff for
UFO03953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17707894..17708212 | 628..940 | 96 | <- | Minus |
| X | 17708289..17708647 | 269..627 | 100 | <- | Minus |
| X | 17709182..17709446 | 1..268 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:11 Download gff for
UFO03953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17602322..17602680 | 269..627 | 100 | <- | Minus |
| arm_X | 17603215..17603479 | 1..268 | 98 | | Minus |
| arm_X | 17601927..17602245 | 628..940 | 96 | <- | Minus |
