UFO03954.5prime Sequence
1110 bp (1018 high quality bases) assembled on 2009-02-13
> UFO03954.5prime
CAGTCGACATGAGAGCCAAGGGATTGTTGAAGGAGTACGAGGTCGTGGGC
CGCAAGCTGCCCAGCGAGAAGGAGCCCCAGACTCCCCTCTACAAGATGCG
CATCTTTGCCCCCGACAACATCGTGGCCAAATCCCGCTTCTGGTACTTCC
TGCGCCAACTGAAGAAGTTCAAGAAGACCACCGGCGAGATCGTGTCCATC
AAGCAGGTGTACGAGACGTCGCCCGTGAAGATCAAGAACTTCGGCATCTG
GCTGCGTTACGATTCCCGCTCGGGCACCCACAACATGTACCGCGAGTACC
GTGACCTGACTGTCGGCGGTGCCGTCACTCAGTGCTACCGCGACATGGGA
GCCCGCCACCGTGCCCGTGCCCACTCCATCCAGATCATTAAGGTGGACTC
GATCCCTGCCGCCAAGACCCGCCGCGTGCACGTGAAGCAGTTCCACGATT
CAAAGATCAAGTTCCCTCTGGTCCAGCGTGTCCACCACAAGGGCAACAGG
AAACTGTTCTCGTTCAGGAAGCCCAGGACCTACTTCCAGGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCT
GAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGA
GTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCA
GTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAA
CGGCATGATGAACCTGATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCG
TATATATTTGCCATGGTGAAACGGGGGCGAAGAGTTGTCATATTGCCACG
TTTAATCAAACTGGTGAACTCACCCAGGGATGGCTGAACGAGAACATATT
TCTCAATAACCTTTAGGGAATAGGCAGGTTCACGTACACGCCACATCTTG
CGAATATATGTGTAGAACTGACGATCGTCAGGTATTCACTCCGACGATGA
ACGTTCAGTT
UFO03954.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL18A-RA | 635 | CG6510-RA | 35..567 | 7..539 | 2665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17546474..17546987 | 539..26 | 2570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:05:11 has no hits.
UFO03954.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:12 Download gff for
UFO03954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL18A-RA | 61..606 | 1..547 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:49 Download gff for
UFO03954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL18A-RA | 29..574 | 1..547 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:06 Download gff for
UFO03954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL18A-RA | 29..574 | 1..547 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:06 Download gff for
UFO03954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17546474..17546986 | 27..539 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:49 Download gff for
UFO03954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13433979..13434491 | 27..539 | 100 | <- | Minus |
