UFO03958.5prime Sequence
1136 bp (1028 high quality bases) assembled on 2009-02-13
> UFO03958.5prime
CAGTCGACATGTTCCCGCATTTGTTTTGTTTGTTTATAGCAATTATGGAT
CCTTCAATTATTGAATTTATTGGCGAAAAATGCATGATCAGCATAATACC
GAACTTCAGCAACGAGCCTCTGCACCTGATATACGGACCTGTGGGCCCTT
TCCGAGCCGGTTTTCCCGTCTTCGTGCCCCTGTGGATGGCCACGCATCTG
CGCAAGCAACAAAAGTGCCGAATTGTACCTCCAGAATGGATGGACATGGA
TATATTGGAGGAAATCAAGGAGGAGGAAAAGCGCTCAAAGTTCTTTACCA
AAATGCCCTGTGAGCATTACATGGTAGTGGCCCAGTTGGTCATGAGCACG
GCTCCGGATGACGTTCCGCGTTGCGAGGAGCTGCGCACTGTGATCAAGGA
CATCTTCGACATACGCGAGTCCAAGCTGCGCACTTCGATCGACGCCTTTA
TCAAGGGAGAGGGCACATATGCAAAGCTAGACAACCTCACGCTTCTGGAG
ATCCACAGCGTGAGACCCATTCTGCCCTATTCCCTGGACCACATAGCACG
GTACCAGCGCACGGCCACTGCGTCTCAAAGGGACACCTCCATGCTAAGTG
CATCCATGGCAGGCTCCAGTTCGGGTCCGAACAGTAACTCTCTGTTTTCT
CAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGG
TCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGAT
CCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGG
CAACCGAGCGTTCTGAACAATCCAGATGGAGTTCTGAGTCATTACTGGAT
CTATCAACAGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGC
CACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGAAG
CATCACAACGGCATGATGACCTGAATCGCAGCGCATCAGCACCTTGTCGC
TTGCGTATAAATATTTGCCATGTGAACGGGGGCTAGTAGTGTTCCATATT
GCTCAGTTTAGTCTAACTGTGTAACTCACTCATGAATTGCTGATCAAAAC
ATATTCTCAATGCTAGGAATGCCAGGTTTCACGTAA
UFO03958.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psf2-RB | 831 | CG18013-RB | 27..671 | 9..653 | 3225 | 100 | Plus |
| Psf2-RC | 811 | CG18013-RC | 37..651 | 39..653 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4386342..4386705 | 653..290 | 1820 | 100 | Minus |
| 2L | 23513712 | 2L | 4386762..4387044 | 291..9 | 1415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:24:38 has no hits.
UFO03958.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:34 Download gff for
UFO03958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf2-RA | 3..647 | 9..653 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:24 Download gff for
UFO03958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf2-RB | 24..671 | 5..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:49 Download gff for
UFO03958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf2-RB | 24..671 | 5..653 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:49 Download gff for
UFO03958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4386342..4386705 | 290..653 | 100 | <- | Minus |
| 2L | 4386764..4387047 | 5..289 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:24 Download gff for
UFO03958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4386342..4386705 | 290..653 | 100 | <- | Minus |
| arm_2L | 4386764..4387047 | 5..289 | 99 | | Minus |
