UFO03960.5prime Sequence
1124 bp (985 high quality bases) assembled on 2009-02-13
> UFO03960.5prime
CAGTCGACATGCAGTCCCAATCCCTCCTGCTGATCGTTGCAGCCGTTGCC
ACGTTTCTGGTGGCCCAGACTACGGCCAAGTTCCTGCTGAAGGACCACGC
CGACGCAGAGAAGGCGTTCGAGGAGTGCCGTGAGGACTACTACGTGCCGG
ACGACATCTACGAGAAGTACCTGAACTACGAGTTTCCCGCCCACCGGCGC
ACCAGCTGCTTCGTCAAGTGCTTCCTGGAGAAGCTTGAGCTGTTCTCGGA
GAAGAAGGGATTTGACGAGCGCGCCATGATCGCCCAGTTCACCTCCAAGA
GCAGCAAAGACCTGTCCACGGTCCAGCACGGCCTGGAGAAGTGCATCGAC
CACAACGAGGCCGAGTCGGATGTCTGCACCTGGGCCAACCGAGTCTTCTC
CTGCTGGCTGCCCATCAACCGCCACGTGGTGCGTAAGGTCTTCGCCGCAA
GCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAAT
CATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTC
ATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGA
GCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATC
AACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACT
CATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCA
TCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTC
GCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGT
CCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTG
GCTGAGACGAAAAACATATTCTTCAATAACCCTTTTAGGGAAATAGCCAG
GGTTTCACCGTAACCCCGCCCACATTCTGCGAATATTCGTGTAGAAACTG
CCGGAAATCGGTCGTTGTATTCACTCCAGGAGCCATGAAAACGTTTCTAG
GTTTGCTCATGGAACGGTGTACAAGGGTGAAACCTTTCCATATCCACCAA
GCCTCACCGTTCTTTTTCATTGGC
UFO03960.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp83g-RA | 569 | CG31558-RA | 57..494 | 9..446 | 2190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6111746..6112126 | 446..66 | 1905 | 100 | Minus |
| 3R | 32079331 | 3R | 6112187..6112246 | 68..9 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:09:54 has no hits.
UFO03960.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:32 Download gff for
UFO03960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83g-RA | 42..495 | 1..453 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:04:52 Download gff for
UFO03960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83g-RA | 47..500 | 1..453 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:06 Download gff for
UFO03960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83g-RA | 47..500 | 1..453 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:06 Download gff for
UFO03960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6111746..6112123 | 69..446 | 100 | <- | Minus |
| 3R | 6112187..6112251 | 1..68 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:04:52 Download gff for
UFO03960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1937468..1937845 | 69..446 | 100 | <- | Minus |
| arm_3R | 1937909..1937973 | 1..68 | 94 | | Minus |
