Clone UFO03961 Report

Search the DGRC for UFO03961

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:39
Well:61
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptJon44E-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO03961.5prime Sequence

1107 bp (969 high quality bases) assembled on 2009-02-13

> UFO03961.5prime
CAGTCGACATGAAGCTCTTTGTTTTCCTAGCCTGTCTGGCTGTCGCCTCT
GCCGGAGTGGTGCCCTCCGAGTCCGCCAGGGCTGTCCCAGTGAAGGACAT
GCCACGCGCCGGCAAGATCGAGGGTCGCATTACCAATGGATACCCGGCCT
ACGAGGGCAAGATTCCCTACATTGTCGGACTGAGCTTCAACGATGGCGGC
TACTGGTGCGGGGGTTCCATCATCGACCACACCTGGGTCCTGACCGCAGC
CCACTGCACGAACAGCGCTAACCATGTGCTCATCTACTTCGGAGCCAGCT
TCCGTCACGAGGCCCAGTACACCCACTGGGTGAGCCGCAGCGACATGATC
CAACATCCCGACTGGAACGACTTCCTGAACAACGACATCGCTCTGATCCG
CATCCCCCACGTGGACTTCTGGAGCTTGGTCAACAAGGTGGAGTTGCCCA
GCTACAACGATCGCTACAACAGCTACTCCGGCTGGTGGGCAGTGGCCTCT
GGATGGGGTCTGACAGACAACAACAGCGGCATGTCCAACTACCTGAACTG
CGTCGATGTCCAGATTATTGACAACAACGACTGCCGCAACTACTACGGTA
GCAACTACATCACCGACAACACCATCTGCATCAACACCGACGGCGGCAAG
TCCTCCTGCAGCGGTGACTCCGGTGGTCCCTTGGTCCTGCACGATAACAA
CCGCATCGTGGGCATCGTATCCTTCGGCAGCGGAGAGGGCTGTACCGCCG
GCCGCCCCGCCGGATTCACTCGTGTCACCGGATACCTGGACTGGATCCGC
GACCACACCGGCATTGTCTACGCAAGATTTCTAGACCATTCGTATGGCGC
GCGGGCCCAGGTAAGTGGTCATATCATAATCATAGTCATAATCATAATCA
CACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTGGATTCTTCACCAAT
AAAAAACGCCCGGCGGCACCGCGCGTTCTGAACAAATCGGATGGAGTTCG
GAGTCATTACTGGATCTATCAACAGGAGTTCAGCGAACTCGAGTCAATTA
CGCCCCGGCCCTGGCCACTCATCGACTACTGTGTAATCAATAGCATTCTG
CCGTAAC

UFO03961.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
Jon44E-RB 1397 CG8579-RB 20..834 7..821 4075 100 Plus
Jon44E-RA 900 CG8579-RA 20..834 7..821 4075 100 Plus
Jon99Cii-RA 862 CG31034-RA 126..816 121..814 785 75.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8691467..8692281 7..821 4075 100 Plus
3R 32079331 3R 29924097..29924490 508..121 670 79.2 Minus
3R 32079331 3R 29922339..29922732 121..508 640 78.7 Plus
3R 32079331 3R 30487407..30487808 508..113 605 77.9 Minus
3R 32079331 3R 30489083..30489484 113..508 605 77.9 Plus
2L 23513712 2L 4954627..4955031 514..113 520 75.8 Minus
3R 32079331 3R 29922829..29923029 614..814 255 75.1 Plus
3R 32079331 3R 29923800..29924000 814..614 255 75.1 Minus
3R 32079331 3R 30487110..30487310 814..614 255 75.1 Minus
3R 32079331 3R 30489581..30489652 614..685 225 87.5 Plus
Blast to na_te.dros performed 2014-11-28 23:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2799..2996 449..649 168 56.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2535 449..662 163 55.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2339..2464 517..648 160 60.6 Plus

UFO03961.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:08 Download gff for UFO03961.5prime
Subject Subject Range Query Range Percent Splice Strand
Jon44E-RA 13..837 1..827 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:46 Download gff for UFO03961.5prime
Subject Subject Range Query Range Percent Splice Strand
Jon44E-RA 15..839 1..827 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:43 Download gff for UFO03961.5prime
Subject Subject Range Query Range Percent Splice Strand
Jon44E-RA 15..839 1..827 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:43 Download gff for UFO03961.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8691462..8692286 1..827 99 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:46 Download gff for UFO03961.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4578967..4579791 1..827 99 == Plus