UFO03961.5prime Sequence
1107 bp (969 high quality bases) assembled on 2009-02-13
> UFO03961.5prime
CAGTCGACATGAAGCTCTTTGTTTTCCTAGCCTGTCTGGCTGTCGCCTCT
GCCGGAGTGGTGCCCTCCGAGTCCGCCAGGGCTGTCCCAGTGAAGGACAT
GCCACGCGCCGGCAAGATCGAGGGTCGCATTACCAATGGATACCCGGCCT
ACGAGGGCAAGATTCCCTACATTGTCGGACTGAGCTTCAACGATGGCGGC
TACTGGTGCGGGGGTTCCATCATCGACCACACCTGGGTCCTGACCGCAGC
CCACTGCACGAACAGCGCTAACCATGTGCTCATCTACTTCGGAGCCAGCT
TCCGTCACGAGGCCCAGTACACCCACTGGGTGAGCCGCAGCGACATGATC
CAACATCCCGACTGGAACGACTTCCTGAACAACGACATCGCTCTGATCCG
CATCCCCCACGTGGACTTCTGGAGCTTGGTCAACAAGGTGGAGTTGCCCA
GCTACAACGATCGCTACAACAGCTACTCCGGCTGGTGGGCAGTGGCCTCT
GGATGGGGTCTGACAGACAACAACAGCGGCATGTCCAACTACCTGAACTG
CGTCGATGTCCAGATTATTGACAACAACGACTGCCGCAACTACTACGGTA
GCAACTACATCACCGACAACACCATCTGCATCAACACCGACGGCGGCAAG
TCCTCCTGCAGCGGTGACTCCGGTGGTCCCTTGGTCCTGCACGATAACAA
CCGCATCGTGGGCATCGTATCCTTCGGCAGCGGAGAGGGCTGTACCGCCG
GCCGCCCCGCCGGATTCACTCGTGTCACCGGATACCTGGACTGGATCCGC
GACCACACCGGCATTGTCTACGCAAGATTTCTAGACCATTCGTATGGCGC
GCGGGCCCAGGTAAGTGGTCATATCATAATCATAGTCATAATCATAATCA
CACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTGGATTCTTCACCAAT
AAAAAACGCCCGGCGGCACCGCGCGTTCTGAACAAATCGGATGGAGTTCG
GAGTCATTACTGGATCTATCAACAGGAGTTCAGCGAACTCGAGTCAATTA
CGCCCCGGCCCTGGCCACTCATCGACTACTGTGTAATCAATAGCATTCTG
CCGTAAC
UFO03961.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon44E-RB | 1397 | CG8579-RB | 20..834 | 7..821 | 4075 | 100 | Plus |
Jon44E-RA | 900 | CG8579-RA | 20..834 | 7..821 | 4075 | 100 | Plus |
Jon99Cii-RA | 862 | CG31034-RA | 126..816 | 121..814 | 785 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8691467..8692281 | 7..821 | 4075 | 100 | Plus |
3R | 32079331 | 3R | 29924097..29924490 | 508..121 | 670 | 79.2 | Minus |
3R | 32079331 | 3R | 29922339..29922732 | 121..508 | 640 | 78.7 | Plus |
3R | 32079331 | 3R | 30487407..30487808 | 508..113 | 605 | 77.9 | Minus |
3R | 32079331 | 3R | 30489083..30489484 | 113..508 | 605 | 77.9 | Plus |
2L | 23513712 | 2L | 4954627..4955031 | 514..113 | 520 | 75.8 | Minus |
3R | 32079331 | 3R | 29922829..29923029 | 614..814 | 255 | 75.1 | Plus |
3R | 32079331 | 3R | 29923800..29924000 | 814..614 | 255 | 75.1 | Minus |
3R | 32079331 | 3R | 30487110..30487310 | 814..614 | 255 | 75.1 | Minus |
3R | 32079331 | 3R | 30489581..30489652 | 614..685 | 225 | 87.5 | Plus |
Blast to na_te.dros performed 2014-11-28 23:07:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2799..2996 | 449..649 | 168 | 56.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2535 | 449..662 | 163 | 55.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2339..2464 | 517..648 | 160 | 60.6 | Plus |
UFO03961.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:08 Download gff for
UFO03961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon44E-RA | 13..837 | 1..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:46 Download gff for
UFO03961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon44E-RA | 15..839 | 1..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:43 Download gff for
UFO03961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon44E-RA | 15..839 | 1..827 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:43 Download gff for
UFO03961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8691462..8692286 | 1..827 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:46 Download gff for
UFO03961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4578967..4579791 | 1..827 | 99 | == | Plus |