UFO03962.5prime Sequence
1134 bp (1039 high quality bases) assembled on 2009-02-13
> UFO03962.5prime
CAGTCGACATGTCCATGTCGTTGGGCTCCAAGATCCGGAAATTGGTCACC
AGCAGACGGCACTTCCTGCTTTTGCGCCGATCGCTGAACCAAGATCTGAC
AACGGCGCTGAGACCCTTCTACTTCGCGGTGCATCCTGACTTCTTTGCCC
AGCATCCGGAGCAGAGGAACACCAACGAGAACTCACTGAAATTGCTGAGT
GAGCATCTAGAGGCTTTGTATGAACGCAGACAGCGAAGCGGGGACACCCA
AGTGCTCAAGTTCTATGTACGCACCAGTTCAGATGCTGACAAGCGAGACT
CCTTCAAGCTCATCCAAATACGCACGGACTGGCAGAGTACCCGAGATCCC
AAAACCTTTATTCAAGGTCTTCTGGAGTCATGCAACTTGTCCACGGAGTA
TGTGAAGAACATTAAGGCCCAGCCTGAGCCGCCAAAAACCTCTGGCTTGG
ATTTTAAACCAAGCCATGACTATCACTATGACATGGAGTTCGCCGAGTTT
GAAACTCAGTTGAAGAATGAACGTGCCAGTAAGCGTCCAGTGCTGACCAC
CTGGCTGGAAGAGAATGCTGGCACAGCCAAACAGCGCTCTAAGGAAACTG
CGGATCTGCAGGCCGAAATCGACAAACTGAAAAAAATGCTGGTAGAGAAA
CTGGAGTTGCAAGATGCTCGTTACGAGTGCGGCTGGAACATTGAGCACTA
CCGTGGCTGTTTAAAGACCCTTGAGCGACTATCCAACACCCATTTGTTGG
AAATGGCTTCCCTGAAAGGTCGCATAGTGGTTTTTGCTCCCTTTACGGGC
ATCAGTTTAGAAGGCCATGTGATGCTTTTTACTGGTGATGTTCTCAGCAC
ATGGATTGACTTCATCAAGAACATTCCGCACCACGATGCCTATTTAAAGG
TGGTGCCCGTGTATGACGAACACTGTCTCAGTTCTACTGACATCCAGATA
GTCGTCGCAGTTTATGCCCAACACAGGCAAGTGGCTATGCAGCTACTCAT
GAGTCACCACTTCCGCTCAGCGATACTGGCAACAAATATCGCCGGATGCC
GAAACGCTGAAAGGTTACATATGGTGAATCAAAGGCAGGTTCCTGGATGT
AAGCCTACGGTCAGTTTACAACAGGCACGTTCCG
UFO03962.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13295-RA | 1638 | CG13295-RA | 129..1266 | 9..1118 | 4875 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6074547..6074974 | 519..92 | 2140 | 100 | Minus |
| 3L | 28110227 | 3L | 6074010..6074489 | 991..519 | 2070 | 98.3 | Minus |
| 3L | 28110227 | 3L | 6075033..6075117 | 93..9 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:09:37 has no hits.
UFO03962.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:07 Download gff for
UFO03962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13295-RA | 120..1221 | 1..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:04:40 Download gff for
UFO03962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13295-RA | 125..1226 | 1..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:55 Download gff for
UFO03962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13295-RA | 125..1226 | 1..1081 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:55 Download gff for
UFO03962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6073902..6074489 | 519..1081 | 95 | <- | Minus |
| 3L | 6074548..6074972 | 94..518 | 100 | <- | Minus |
| 3L | 6075033..6075121 | 1..93 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:04:40 Download gff for
UFO03962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6067002..6067589 | 519..1081 | 95 | <- | Minus |
| arm_3L | 6067648..6068072 | 94..518 | 100 | <- | Minus |
| arm_3L | 6068133..6068221 | 1..93 | 95 | | Minus |
