UFO03963.5prime Sequence
1150 bp (1042 high quality bases) assembled on 2009-02-13
> UFO03963.5prime
CAGTCGACATGTCCTCACGCTACGATCGTGCTGTAACCATATTCTCTCCC
GACGGTCACCTCCTGCAGGTGGAGTATGCCCAGGAGGCCGTTCGCAAGGG
ATCGACTGCGGTCGGAGTTCGCGGCGCCAACTGCGTTGTGCTTGGCGTGG
AGAAGAAGTCGGTGGCCCAACTGCAGGAGGATCGAAAGGTGCGCAAGATT
TGCATGCTCGACAACCACGTTGTAATGGCTTTTGCCGGTCTCACGGCCGA
CGCTCGCATCATGATCAATCGTGCCCAGGTGGAGTGCCAGAGCCATCGTC
TCAATGTCGAGGATCCCGTGACCCTCGAGTACATAACCAGATTCATTGCC
CAGCTGAAACAAAAATACACGCAGAGCAATGGCCGCCGTCCCTTCGGTAT
TTCCTGCCTTATTGGCGGCTTCGATGCCGATGGCTCTGCGCATCTGTTCC
AGACTGAGCCGTCGGGCATTTTCTACGAGTATAAGGCTAACGCCACCGGG
CGATCGGCAAAGGTTGTGCGCGAGTTCTTCGAGAAGTCCTACCGCGAGGA
GGAGGTGGCCAACGAGCACGGAGCCGTCAAACTGGCCATCCGTGCGCTGC
TCGAGGTGGCGCAGTCAGGCCAGAACAATCTGGAGGTGGCCATCATGGAG
AACGGCAAGCCACTGAAAATGCTGGACACCGATGTCATTACCGATTATGT
TAAGATCATCGAGAAGGAGAAGGAGGAGGAGCTCGAGAAGAAGAAACAGA
AAAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAG
ATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAACGCCCGGCG
GCAACCGAGCGTTCTGACAATCCAGATGGAGTTCTGAGGTCATTACTGGA
TCTATCACAGGAGTCCAAGCGAGCTCGATAATCAAATTACGCCCCGCCCT
GCCCTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCGAACATGCA
GCCATCACAAACGCATGAATGACTCTGATCGCCAGCGCATCAGCACTTTC
GCCTTGGCAAATATTTTGGCCAATGCGAAACGGGCCGAAGAAGTGTCCTA
UFO03963.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha4-RA | 1176 | CG3422-RA | 149..895 | 9..755 | 3735 | 100 | Plus |
| Prosalpha4T1-RA | 891 | CG17268-RA | 57..726 | 9..678 | 1175 | 78.9 | Plus |
| Prosalpha4T2-RB | 1254 | CG4569-RB | 103..581 | 21..499 | 880 | 79.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16276890..16277306 | 339..755 | 2085 | 100 | Plus |
| 3R | 32079331 | 3R | 20748349..20749018 | 678..9 | 1175 | 78.4 | Minus |
| X | 23542271 | X | 16276596..16276826 | 110..340 | 1155 | 100 | Plus |
| X | 23542271 | X | 16276418..16276521 | 9..112 | 520 | 100 | Plus |
| 2R | 25286936 | 2R | 24501794..24501988 | 338..144 | 390 | 80 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:03:09 has no hits.
UFO03963.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:06 Download gff for
UFO03963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pros28.1-RA | 140..896 | 1..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:33 Download gff for
UFO03963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha4-RA | 142..898 | 1..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:06 Download gff for
UFO03963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha4-RA | 142..898 | 1..759 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:06 Download gff for
UFO03963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16276411..16276519 | 1..110 | 96 | -> | Plus |
| X | 16276597..16276826 | 111..340 | 100 | -> | Plus |
| X | 16276892..16277309 | 341..759 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:33 Download gff for
UFO03963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16170444..16170552 | 1..110 | 96 | -> | Plus |
| arm_X | 16170630..16170859 | 111..340 | 100 | -> | Plus |
| arm_X | 16170925..16171342 | 341..759 | 99 | == | Plus |
