UFO03966.5prime Sequence
1131 bp (1000 high quality bases) assembled on 2009-02-13
> UFO03966.5prime
CAGTCGACATGTCGAGGCGAGGACTCCTACTAATGGGCCAGTGCATGCCC
TGCATCAAGCAGAACGCCTCCAAGATCCGCATTCGCCGAATGGAGCTGGA
CAAGAACCTGAATATGTACTTTAAGAAGGACGAGTTCTACTTCGCCCACG
ATCCGCAGAAGGTGTGCAAGACCGGGGACGTGGTCCTGATACGGGAACTG
CCAGAGCGCCTCACCCGCCTCATCACGCACAACGTGGAAAAAGTGGTCTA
TCCGCTGGGTGACATAACGGACCCGCTCACTGGCAAGAAGGTGGTCGTGG
GCAATTACCGCGAGGACATCGAGATGGCCAACCAGCTGTTCGGCAAGTCA
GAGAAGGCCTTCGACTACGAGAAGGCACCGCCCCGCGGTCGCCTGGAGGG
AACCAAGGACTTCACCCACGGGGAAACATACATCAAGTACCACGAGGATG
GCAAGGATCAGCCGTTCGCCGTTGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA
TTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTG
AATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCA
TGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCA
AACTGGTGAAACTCACCCAGGGATTGCTGAGACGAAAACATATTTCTCAT
AACCCTTTAGGGAATAGCCAGGTTTCACCGTAACACGCCACATCTTGCGA
ATTATTGGTGTAGAACTGCCGGAAATCGTCTGTATTCACTCAGAGCGATG
AAACGTTTCACGTTGCTCATGAACGGGTACAAGGTGAACTATCATCACGA
TCCACGTCTTTCATGCCATCGAATTCCGGAT
UFO03966.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS17-RA | 713 | CG4326-RA | 75..539 | 9..473 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24173839..24174196 | 473..116 | 1790 | 100 | Minus |
| 2R | 25286936 | 2R | 24174260..24174367 | 116..9 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:12:55 has no hits.
UFO03966.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:04 Download gff for
UFO03966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS17-RA | 64..540 | 1..480 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:20:35 Download gff for
UFO03966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS17-RA | 70..546 | 1..480 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:53:41 Download gff for
UFO03966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS17-RA | 70..546 | 1..480 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:53:41 Download gff for
UFO03966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24173839..24174195 | 117..473 | 100 | <- | Minus |
| 2R | 24174260..24174371 | 1..116 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:20:35 Download gff for
UFO03966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20061362..20061718 | 117..473 | 100 | <- | Minus |
| arm_2R | 20061783..20061894 | 1..116 | 96 | | Minus |
