UFO03967.5prime Sequence
1134 bp (1014 high quality bases) assembled on 2009-02-13
> UFO03967.5prime
CAGTCGACATGAGCCTGAAAGTTTTTCTAGTCCTAGCTTTGGCTCTATCG
TCCTGCCAAGCGCTCCCCTATGTATCCTATGATGATGTTGACGATACGGA
GGTCATCGAGCTGCCTGGAAATGGAATCGAGGAGATACCACCCACTCTTG
GCAAGGATATCATCGACCTGACACCATTGGGAACGGCGCTCTTTGGCAAA
CCGGATGAGGAGCTAACGGCGAATCGTGTGGGTAACTTTAGTGCGGATGC
AGATGAGATGAATCCTGAGGAACTGGGCAGCTATCTGGAGGGTGATATGC
TGGTGCCGCAAACGGATCTGATTATGAAAAATGGACTGCCCACTCAGTCC
TCCCGTTGGCCAAATGGTGTGGTGCCATATGAAATCCGAGGAAACTTCAA
TGCCAGAGATATGGCCACAATTGAAAATGCCATTGGTGAGTACCATCGTC
GGACGTGCATTCGGTTTGTGAAGCGCAGCTCTGAGCGGGACTACATCTCC
ATTCGCGGCGACAACTCCGGCTGTTGGTCCTCCGTTGGTCGAGTGGGTGG
CAAGCAGGAGGTGAACCTACAGTCTCCCGGCTGTCTCAGCCGTCCAGGAA
CCGCCATGCACGAGCTGATGCACGCCCTCGGCTTCCTTCATGAACAGAAC
CGTATGGAGCGCGATGGTTATGTGGCCATCCAGTACAACAATGTCCAGTC
CTCGGCGATGAACAACTTCGAAAAGGCCGCCCGCACGGAAGCCTTTGGGG
TGCCCTACGACTATGGCAGCGTGATGCACTACTCCAAGAACGCCTTCTCC
ATCAACGGACAGCCCACCATACTGGCCATGCAAGCCAATGGCGCCGATAA
ATGGCCAGAGGAATGGTTTCTCCGACTACGATATCCAGAAGCTGAATCGT
ATGTACGATTGTGGCACCGTCACGCTGTTCCAGTGCCCAGGATTACCCGC
CCCTGCTCTGCTCCTGCGCCCTGCTGGCAGTGCAATCCGATTGTAGATAG
CTCATCGCGCTGATCAGCGGAATGGGATGGCGATGAAGGAGAAACAGTTC
AGCAAGCTTCTAAACATCGTTGGCGCGCGGGCCCAGTAGTGCCTATCCTA
ATCTATTACTATCAATCAATGCCTAGGTAATCTG
UFO03967.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6763-RB | 1275 | CG6763-RB | 74..1117 | 9..1037 | 4835 | 98.4 | Plus |
| CG6763-RA | 1974 | CG6763-RA | 773..1816 | 9..1037 | 4835 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23284774..23285595 | 9..830 | 4095 | 99.9 | Plus |
| 3R | 32079331 | 3R | 23285661..23285842 | 830..1002 | 505 | 92.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:03:03 has no hits.
UFO03967.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:03 Download gff for
UFO03967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6763-RA | 773..1821 | 9..1043 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:30 Download gff for
UFO03967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6763-RA | 773..1821 | 9..1043 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:02 Download gff for
UFO03967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6763-RA | 773..1821 | 9..1043 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:02 Download gff for
UFO03967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23284774..23285595 | 9..830 | 99 | -> | Plus |
| 3R | 23285662..23285872 | 831..1028 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:30 Download gff for
UFO03967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19110496..19111317 | 9..830 | 99 | -> | Plus |
| arm_3R | 19111384..19111594 | 831..1028 | 93 | | Plus |
