UFO03968.5prime Sequence
1097 bp (1010 high quality bases) assembled on 2009-02-13
> UFO03968.5prime
CAGTCGACATGCCTCCCAAATTCGACCCAACGGAAGTTAAATTGGTGTAC
CTGCGTTGCGTGGGCGGAGAAGTCGGTGCCACATCCTCCCTGGCCCCAAA
GATCGGTCCCCTCGGTCTGTCGCCCAAGAAAATCGGTGATGACATCGCCA
AGGCCACCTCCGACTGGAAGGGTCTGAAGATCACCGTCTGCCTGACCATC
CAGAACCGACAGGCCGCCATCTCCGTGGTTCCCTCCGCCGCCTCGCTGAT
CATCAAGGCTCTGAAGGAACCCCCACGTGACCGCAAGAAGCAGAAGAACA
TCAAGCACAGTGGAAACATTGGCTTCGAAGACATTCTGGCCATCGCCCGC
GTGATGAGGCCCAGGTCCATGGCCCGTGAGTTGAAGGGAACCTGCAAGGA
AGTTCTGGGAACCGCCCAGAGCGTCGGCTGCACCGTTGACGGAAAGCACC
CTCACGATGTTATTGACGAACTGAACGAGGGCTCCATTGAAGTCCCCGCG
GAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGG
TCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGAT
CCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGG
CAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGG
ATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCC
TGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATG
GAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCA
CCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAACGGGGCGAAGAA
GTTGTCCATATTGCCACGTTTAAATCAAAACTGGTGAAACTCACCAGGGA
TTGGCTGAGACGAAAACATATTCTCAATAAACCTTTAGGGAATAGTCAGC
TTTCACGTAACCGCCACATCTTGCGAATTATTGTGTAACACTGCGAATCG
TCTGATTCACCCGCGATAACGTCTCATTTGCTCATGAACGGTTACAA
UFO03968.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL12-RC | 1095 | CG3195-RC | 93..587 | 9..503 | 2475 | 100 | Plus |
| RpL12-RB | 640 | CG3195-RB | 85..579 | 9..503 | 2475 | 100 | Plus |
| RpL12-RA | 648 | CG3195-RA | 93..587 | 9..503 | 2475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24061150..24061352 | 301..503 | 1015 | 100 | Plus |
| 2R | 25286936 | 2R | 24060812..24060993 | 119..300 | 910 | 100 | Plus |
| 2R | 25286936 | 2R | 24060675..24060749 | 45..119 | 375 | 100 | Plus |
| 2R | 25286936 | 2R | 24060538..24060574 | 9..45 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:44:37 has no hits.
UFO03968.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:02 Download gff for
UFO03968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL12-RA | 67..568 | 5..507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:47 Download gff for
UFO03968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL12-RA | 89..590 | 5..507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:27:33 Download gff for
UFO03968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL12-RA | 89..590 | 5..507 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:27:33 Download gff for
UFO03968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24061150..24061352 | 301..503 | 100 | == | Plus |
| 2R | 24060534..24060574 | 5..45 | 95 | -> | Plus |
| 2R | 24060676..24060749 | 46..119 | 100 | -> | Plus |
| 2R | 24060813..24060993 | 120..300 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:47 Download gff for
UFO03968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19948057..19948097 | 5..45 | 95 | -> | Plus |
| arm_2R | 19948199..19948272 | 46..119 | 100 | -> | Plus |
| arm_2R | 19948336..19948516 | 120..300 | 100 | -> | Plus |
| arm_2R | 19948673..19948875 | 301..503 | 100 | == | Plus |
