UFO03970.5prime Sequence
1118 bp (1016 high quality bases) assembled on 2009-02-13
> UFO03970.5prime
CAGTCGACATGGACAGCGATTTGAAAGCCAAGGTCGAGAGCTGCGCCCGT
ACGGCGGATACCTTCACACGCCTGTACTACGCCTCCGTGGACAACCGACG
CCAACAAATTGGACGCCTCTATTTGGACAATGCTACGCTTAGCTGGAATG
GAAACGGGGCCATCGGCCGCCAGATGATCGAGAGCTACTTTCAGGAGCTG
CCATCCTCAAACCACCAGTTGAACACCCTGGACGCGCAGCCTATTGTGGA
TCAGGCTGTGTCCAACCAGCTGGCCTACCTCATCATGGCCAGCGGCTCCG
TCAAGTTCGCAGATCAGCAGTTACGCAAATTTCAGCAGACTTTCATCGTT
ACCGCCGAGAATGATAAATGGAAGGTCGTCTCCGATTGCTACCGAATGCA
GGAGGTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGG
AGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCG
GCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTA
CTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCC
GCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGA
CATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATC
AGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGC
GAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAACTGGTGAAACTCAC
CCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGAA
ATAGGCCAGGTTTTCACCGTACACGCCACATCTTGCGAATATATGTGTAG
AAACTGCCGGAAATCGTCGTGTATTCACTCCAGAGCGATGAAAACGTTCA
GTTTGCTCATGGAAACGGTGTACAAGTGAAACTATCCAATATCACCAGCT
CACGTCTTTCATGCATACAATTCGGGAGTACATTCATAGCGTGCAGAATG
TGAATAAGGCCGATACTT
UFO03970.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nxt1-RA | 527 | CG12752-RA | 26..426 | 7..407 | 2005 | 100 | Plus |
| Nxt1-RB | 540 | CG12752-RB | 26..439 | 7..407 | 1865 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23811422..23811724 | 407..105 | 1515 | 100 | Minus |
| 2R | 25286936 | 2R | 23811795..23811881 | 104..18 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:38:26 has no hits.
UFO03970.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:11 Download gff for
UFO03970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nxt1-RA | 19..425 | 1..407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:53 Download gff for
UFO03970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nxt1-RA | 20..426 | 1..407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:15 Download gff for
UFO03970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nxt1-RA | 20..426 | 1..407 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:15 Download gff for
UFO03970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23811422..23811724 | 105..407 | 100 | <- | Minus |
| 2R | 23811795..23811883 | 15..104 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:53 Download gff for
UFO03970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19698945..19699247 | 105..407 | 100 | <- | Minus |
| arm_2R | 19699318..19699406 | 15..104 | 98 | | Minus |
