UFO03971.5prime Sequence
1129 bp (1032 high quality bases) assembled on 2009-02-13
> UFO03971.5prime
CAGTCGACATGGCCACGACGGCGGCGGGGATCCAACAGCAGCAGGTGATT
GGCCTGGGAGCGGCATACGATCGACAGCAAAGCACCGATTCCGGCTGGGA
CAATCCCTTTCGACCAGGCGGCGATCTGTCCAGAGAGGCTGATGAAATTG
TCAATATGATCAGAGGTGGCAAGCCCATCACACCCACAGAGGAGCGTACA
ATTGGCAACGGGAGCGCCCAGCATGCGGACGACAATTGCAACGGCGGTAC
GGCGATCGGCGAGAGTGTAATCAAATCAAATCTCTCGCAGAATCTAGCAA
CAGCACAAAATGGTACAAATTCCCATGCCTCTGCAACTGCCGACGCTGGC
GCCGGAAAAGCAGCGACGGCGACCGAGCTGAGCGGCGGAACCGGAAACAA
TGGGGTCACCTCGCTGGGACAGGTGTCCAAACAGGTGGTTCCCGGACCGA
CGTCCGCTAGTCATGTGGTCATCGACGAGAAGAAGAACAAGAAGAAGGGC
TGCTGTGTCCTTCAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGC
CCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACT
AGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAA
AACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGA
GGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAAT
TACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCAT
TCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCA
GCGGCATCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAAA
CGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAACTGGTGA
AACTCCACCCAGGGATTGCTGAGACGAAAAACATATTTCTCATAACCCTT
TAGGGAAATAGGCCAGGTTTCACCGTACACGCCACATCTGGCGAATCTTT
GTGTAGAACCGCGATCGTCTTGATTCACTCCGAAGCGATGAAACGTTCAG
TTGCTCATGGAAACGGGTGTTAACAGGGC
UFO03971.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42258-RF | 2740 | CG42258-RF | 373..879 | 9..515 | 2535 | 100 | Plus |
| CG42258-RD | 1806 | CG42258-RD | 373..879 | 9..515 | 2535 | 100 | Plus |
| CG42258-RC | 3827 | CG42258-RC | 1460..1966 | 9..515 | 2535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12476337..12476570 | 282..515 | 1170 | 100 | Plus |
| X | 23542271 | X | 12476151..12476268 | 164..281 | 590 | 100 | Plus |
| X | 23542271 | X | 12475913..12475999 | 81..167 | 435 | 100 | Plus |
| X | 23542271 | X | 12475767..12475840 | 9..82 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:03:12 has no hits.
UFO03971.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:09 Download gff for
UFO03971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42258-RC | 889..1400 | 9..523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:36 Download gff for
UFO03971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42258-RC | 1460..1971 | 9..523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:08 Download gff for
UFO03971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42258-RC | 1460..1971 | 9..523 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:08 Download gff for
UFO03971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12475767..12475840 | 9..82 | 100 | -> | Plus |
| X | 12475915..12475997 | 83..165 | 100 | -> | Plus |
| X | 12476153..12476268 | 166..281 | 100 | -> | Plus |
| X | 12476337..12476570 | 282..515 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:36 Download gff for
UFO03971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12369800..12369873 | 9..82 | 100 | -> | Plus |
| arm_X | 12369948..12370030 | 83..165 | 100 | -> | Plus |
| arm_X | 12370186..12370301 | 166..281 | 100 | -> | Plus |
| arm_X | 12370370..12370603 | 282..515 | 100 | == | Plus |
