UFO03972.5prime Sequence
1127 bp (1032 high quality bases) assembled on 2009-02-13
> UFO03972.5prime
CAGTCGACATGAGTGCCGTGAACGATCCGCTGGAACTTTTGACGAACAAG
GGCACCCACGAGCCTTCTTTCCTCTCGCCGATATGGAATCCGATTGCCTG
CGGTGTGGCCGGCGTGGGCGCGGCCATTTTCATCAACTGGGGCTTCCGTA
AGCCCGTGTTTTCCGGCATCCAGAAGCACATCGCCTTCGGAGCTATCGGC
GTCGGCGCAGGAGCTTATTTCGATCAGAAGAGGAACGAGTACCTGGCCAA
AAGGGACGCCGTCCTCCGGCACTACATCGAACTGCATCCCGACGATTTCC
CGGTGAAGGAACGCAAGACCTATGGCCAAGTGCTGGAGAGTTGGGTGCCA
GTGCGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAG
TGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGA
GATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGG
CGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTAC
TGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCG
CCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGAC
ATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCA
GCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCG
AAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCAC
CCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGA
AATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGT
AGAAACTGCCGGGAAATCGTCGTGGTATTCACTCAGAGCGATGAAAACGT
TTCAGTTTGCTCATGGAAACGGTGTAACAAGGGTGAACACTATCCATATC
ACCAGCTTCACCGTCTTTTCATTGCCATACGAAATTCCGGAAGGAACAAT
TCTACCAGGCGGGCAAGAATGTGAATAAGGCCCGGAATAAACTGGGCTTA
ATCCTACGGCCTTAAAAAAGGCGCGTA
UFO03972.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12400-RB | 762 | CG12400-RB | 163..512 | 7..356 | 1750 | 100 | Plus |
| CG12400-RA | 458 | CG12400-RA | 36..385 | 7..356 | 1750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3145527..3145686 | 166..7 | 800 | 100 | Minus |
| 2L | 23513712 | 2L | 3145305..3145449 | 309..165 | 725 | 100 | Minus |
| 2L | 23513712 | 2L | 3145203..3145250 | 356..309 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:09:42 has no hits.
UFO03972.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:09 Download gff for
UFO03972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12400-RA | 28..387 | 1..361 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:04:43 Download gff for
UFO03972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12400-RA | 30..389 | 1..361 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:58 Download gff for
UFO03972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12400-RA | 30..389 | 1..361 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:58 Download gff for
UFO03972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3145528..3145690 | 1..165 | 98 | | Minus |
| 2L | 3145203..3145249 | 310..356 | 100 | <- | Minus |
| 2L | 3145305..3145448 | 166..309 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:04:43 Download gff for
UFO03972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3145528..3145690 | 1..165 | 98 | | Minus |
| arm_2L | 3145203..3145249 | 310..356 | 100 | <- | Minus |
| arm_2L | 3145305..3145448 | 166..309 | 100 | <- | Minus |
