UFO03974.5prime Sequence
1133 bp (1027 high quality bases) assembled on 2009-02-13
> UFO03974.5prime
CAGTCGACATGCCTAGCGGTGTTTTTCAAAAACGGCCAAAAGCAGCCGAA
ACTATTTCGCTGTTCTGCATGATCTTAATAAGGCTGAGCCGTGCCGCGGA
TGACAGCCATGAGACGAGCACTTTGTTAGCCACCATCACTACCATAACCA
CCGAGATCATTCCGATGCCCGATTCTGGGCGCAGCTGCTTCGGTTGGTCC
TCCGCGCCGGAGGCAGCGGGCGGCAACTGCTCCAGATCGAACCGGAATGG
AACACTTAAGTGCTATGGCGGAATGAATAACCTGGCTGCGCTGAACCAAT
CTGGAAAGTTGAGTAGAGTCCAGCCCGCACTGGAAATGCTTCTGTGCGGC
TGGCCAAAGGATGGTCTAAATCATTTCAGGGATCTTCAGAAATTGCCTCG
CCTTCGATCACTGACCATCGAGTACAGTGGCTTCACCGAATTCAAATTCG
ACTTTCCCGAAATGTTGGAGCTACATACTATCAACATTTCGTGGACGAAT
CTCTCGTACATCTCATCGCGAACCTTCAAACGTGTGCATCCGCTCAAGGT
CTTAGATCTGCGATGGAACCAGCTCATTCAACTGGATGGACCACTGTTGC
TGCCCCGCAATTTCGAGCAACTCTATCTGGCGGGCAATCCGTGGAACTGT
ACGCGCAACTTCAAGTGGTTGCTGCTGCAGCCGGAAAAGGGACGCCTGGT
GGTGGATCGCGACGAACTAATATGCACAGATCGAAAGTATAAGGAACGCC
AGATGCTCATGGTCATGCACTACAAACTGGAGCTGAAGAGACAATGCCAA
TCGCATGAGGATCTAAGGAACTGCACTTGCCTAATGCATCACATCTTACC
CAAGACTCACATACCGCTCTATACGGTCAACTGTTCCCATTTGCAGTTCC
ATCGCTTGCCTGACTTTTGCCGGACACACACCACTTTAGTATAAACGATA
TATGATCAGTGACATAAATCCGCTGCGGGACATCCCCACTACCGCCACGT
TGGTGATATGCAGCTGGAGAACATCAGATATCATGTGACAACTGGAGGAC
CTTACTGGCTGGAGAACTTCCGCTGCTCAATCTGCGTGAAACATCTGGCC
AAGCTTCAGTCTACGCCTGGACACCTCTGAGAA
UFO03974.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| swi2-RA | 2582 | CG14485-RA | 270..1401 | 9..1123 | 5155 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17691942..17692426 | 780..296 | 2425 | 100 | Minus |
| 2R | 25286936 | 2R | 17692579..17692793 | 295..81 | 1075 | 100 | Minus |
| 2R | 25286936 | 2R | 17691745..17691884 | 918..779 | 700 | 100 | Minus |
| 2R | 25286936 | 2R | 17695010..17695084 | 83..9 | 375 | 100 | Minus |
| 2R | 25286936 | 2R | 17691495..17691637 | 1088..954 | 305 | 92.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:07:36 has no hits.
UFO03974.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:54:57 Download gff for
UFO03974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swi2-RA | 268..1382 | 9..1108 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:41 Download gff for
UFO03974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swi2-RA | 270..1384 | 9..1108 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:39 Download gff for
UFO03974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swi2-RA | 270..1384 | 9..1108 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:39 Download gff for
UFO03974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17691704..17691883 | 780..954 | 97 | <- | Minus |
| 2R | 17691943..17692426 | 296..779 | 100 | <- | Minus |
| 2R | 17692579..17692791 | 83..295 | 100 | <- | Minus |
| 2R | 17695011..17695084 | 9..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:41 Download gff for
UFO03974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13579209..13579388 | 780..954 | 97 | <- | Minus |
| arm_2R | 13579448..13579931 | 296..779 | 100 | <- | Minus |
| arm_2R | 13580084..13580296 | 83..295 | 100 | <- | Minus |
| arm_2R | 13582516..13582589 | 9..82 | 100 | | Minus |
