Clone UFO03975 Report

Search the DGRC for UFO03975

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:39
Well:75
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG13311-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO03975.5prime Sequence

503 bp (20 high quality bases) assembled on 2009-02-13

> UFO03975.5prime
CAATCCACATGCATTAATCCCTTATCCTAGGAAACCTATGCCTCATTGTG
GTTGTAAGCTCGATGGTTTTTCTGGTCCAAGGAGTGTGCATTCCTTGCCA
ATCCCCCAATGTGAAATGCCTGAATGAAACGCACTATAGCTTTTGCTCCG
ATAATGTGGCCCCCAATCATGTCCTTCTTTGTCCGGATAATTTTTTCTGC
CCCGACCTGGCCATCATCTGCATGGACAGCAATGAAGAGGATAGCTCCTG
CTCTTGCCCTGCCGATGGATCCTGCCCCACCTGCGATGGAAACAGAATGT
TCTTCTGCACCAGTCTCACCACCTTCCAGATGTGCGATGGCACCAACCTA
ACTGGCCAGGTCACCAAGTGCAAGGACAACAAGATCTGCTCGATTAAATC
GGGCAAATACTGCGTGGATCTCTGCTAAGTGGGTGATTCCGTCGAATGCG
ATAGGGACAGTCCGCTAGAAAGCTTTCTAAACGATTCTTTTGGCGCGCGG
GCG

UFO03975.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG13311-RA 568 CG13311-RA 37..495 9..467 1755 92.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8801613..8802041 467..39 1680 92.8 Minus
Blast to na_te.dros performed on 2014-11-28 23:12:52 has no hits.

UFO03975.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:54:56 Download gff for UFO03975.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13311-RA 35..506 9..481 91   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:20:33 Download gff for UFO03975.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13311-RA 37..508 9..481 91   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:53:40 Download gff for UFO03975.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13311-RA 37..508 9..481 91   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:53:40 Download gff for UFO03975.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8801600..8802041 39..481 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:20:33 Download gff for UFO03975.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8794700..8795141 39..481 91   Minus