UFO03976.5prime Sequence
1131 bp (1024 high quality bases) assembled on 2009-02-13
> UFO03976.5prime
CAGTCGACATGGTGAATGACTCTGGTCTATCGACAGTGGACGACTTGGAG
CAAAAACTGAATTCGGCCAAGCAGTCGCTGGTGATCCTAAATGAAAACAT
TCGCCGCATTGCTGGTCGCGTCCCCAAGGAATCCCTGCAGAGATCGGAAA
AATTCAAATACACCCAAGATGGCAAGAAGAACGAGCACAATGGGGACCGA
CCGTTCCCCCGAAATGCAACACCCGGTGGGGTCTTCAAAGACAAGCGGCG
AATGTACGAAAGCAAGAATCCAATTTCCCGTTTCCCAATCGAAGAAAACG
AGGGTCGTCCGCCACGGATTAACTCGCGGGTCATCCGGGAGATGCCAACT
AAAAAGGAGATTGTCGAGGCACAGGGCACAGACTCTGAGTCGAGGGCCAG
GAATCGCAGGATGTTCGGATCGCTGTTGGGAACCCTACAGAAGTTCTGTC
AGGAGGAATCGCGACTGAAGAGCAAGGAGGATAAAAAGGCTGAGATCGAT
AGGAAGGTGGAAAAGCAGGAACTGCAGGAAAGAGCGATGCTGAGGAAACA
GCGTGAAACACTATTCTTAGATAGGAAAAAAAAGCAATTCGAGATCCGTA
GATTAGAGTACAAAATGGCCAGAATGAAGGACTTCAAGGTCTGGGAAGCA
ACTATGTTGAATGCGAAAAATAACATCCGAACAAAAACGAAACCACATCT
GTTCTTTAGGCCAAAAGTGCATTCGCCTAGAACGGAAAAATTGTTGAGCA
AAAGCAAAAGTGAAGCTGATGTGTTTATAGAATTCCGGCGCGAAGAATTG
GAAGTTGAGCTTAAAAACTTGGAGAACATGAACTTTGGGAAGATGGAAGA
CGATACTGCAATAGACGAAAGTTTCTATGAGAGCCTGACGACGAAGAGCA
GTTGGATAAGTGTAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGTAAGTGGTCATAATCATAATCATATCATATCATAATCACACTAGC
CTAGGAGATCTGTCATGACTGTGCTGATTCTCACCAATAAAAACGCCCGG
CGCACCGAGCGTCTGAACAATCGAAGGGATCGAGGTCTATACTGATCTAT
CACGGATTCAGCGAGCTCGAATATCAATAGC
UFO03976.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pnn-RA | 1202 | CG8383-RA | 111..1019 | 9..916 | 4520 | 99.9 | Plus |
| Pnn-RB | 1659 | CG8383-RB | 111..1014 | 9..911 | 4495 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9741197..9741973 | 141..916 | 3835 | 99.9 | Plus |
| 3R | 32079331 | 3R | 9741009..9741142 | 9..142 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:17:11 has no hits.
UFO03976.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:54:56 Download gff for
UFO03976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pnn-RA | 88..1006 | 9..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:42 Download gff for
UFO03976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pnn-RA | 111..1029 | 9..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:56:05 Download gff for
UFO03976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pnn-RA | 111..1029 | 9..929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:56:05 Download gff for
UFO03976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9741009..9741142 | 9..142 | 100 | -> | Plus |
| 3R | 9741199..9741973 | 143..916 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:42 Download gff for
UFO03976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5566731..5566864 | 9..142 | 100 | -> | Plus |
| arm_3R | 5566921..5567695 | 143..916 | 99 | == | Plus |
