UFO03978.5prime Sequence
1132 bp (1029 high quality bases) assembled on 2009-02-13
> UFO03978.5prime
CAGTCGACATGGCGGCCAAGAAACTGGGAATGGACTTTGTGAAGCAGATG
TCCGAGTACGCCAGCGGGTCCAATGGATTCGACCGCGTCTTGAAAATGAT
TAAAATTACAGGCGGTGGAGATGGTCGCGCAATAGGGGAGTTCACTGTGG
CCAATGAGCATTTGAATCGCCAAGGAACTTTGCACGGTGGTCTTACGGCA
ACAATTGTTGATAATTGTACCACATATGCCCTTATGTCGAAAGGATCCCA
TCCCGGAGTTACGGCCAACCTGAATGTAAGCTACATTGCAGCAGCGAAAC
CTGGCGAACTTATTGAAATTGATTGTAATACCGTGCGGGCCGGTAAGAAA
ATGGCCTATTTGGACTGCATTCTGAGGCGTAAGTCCGATGGAAAGATCAT
CGCCAAGGGCGGACAGGTCAAGTACATTCAGTTCGACAAGGAAAAACTGG
ATTTTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAG
ATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGC
GGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACT
GGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGC
CCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACA
TGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAG
CACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGA
AGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACC
CAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAA
TAGGCCAGGTTTTCACGTAACCCGCCACATCTTGCGAATATATGTGTAGA
ACTGCCGGAAATCGTCGTGGTATCACCTCCAGAGCGATGAAACGTTTCAG
TTGCTCATGGAACGGGGTACAAGTGAAACTTATCCCATATACCAGCTCAC
GTCTATCATGCATACGAATACGAATAACACAT
UFO03978.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16985-RA | 641 | CG16985-RA | 61..507 | 9..455 | 2235 | 100 | Plus |
| CG12182-RC | 3493 | CG12182-RC | 79..145 | 98..32 | 335 | 100 | Minus |
| CG12182-RB | 2508 | CG12182-RB | 79..145 | 98..32 | 335 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2599894..2600108 | 241..455 | 1075 | 100 | Plus |
| 3L | 28110227 | 3L | 2599687..2599833 | 98..244 | 735 | 100 | Plus |
| 3L | 28110227 | 3L | 2599435..2599501 | 32..98 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:48:25 has no hits.
UFO03978.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:54:54 Download gff for
UFO03978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16985-RA | 49..505 | 1..459 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:45 Download gff for
UFO03978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16985-RA | 54..510 | 1..459 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:19:09 Download gff for
UFO03978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16985-RA | 54..510 | 1..459 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:19:09 Download gff for
UFO03978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2599436..2599501 | 33..98 | 100 | -> | Plus |
| 3L | 2599688..2599832 | 99..243 | 100 | -> | Plus |
| 3L | 2599897..2600108 | 244..455 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:45 Download gff for
UFO03978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2599436..2599501 | 33..98 | 100 | -> | Plus |
| arm_3L | 2599688..2599832 | 99..243 | 100 | -> | Plus |
| arm_3L | 2599897..2600108 | 244..455 | 100 | == | Plus |
