UFO03979.5prime Sequence
1121 bp (966 high quality bases) assembled on 2009-02-13
> UFO03979.5prime
CAGTCGACATGGCTCTCATTGACACCGCCTGGCGTTGTCGCCTCATGATC
TTCGTTATCGTCTCGCTGCTCCTTGTGGGCGATCTTTTTGGATACGGCGG
CGGCATGAAGTCCAACCACCCCAATCCGCACTCGGTAAGATCGGCGCGGG
GCGCGGTGCCGGGTGGTGCCCCAACGGGTCCGGCGGCTGCAGCGGCCAGC
AAGTTCCAGACCAAAAATGCCGAAATCGACATAACTGAAGAGCACGATTT
CAATGAACTCTCAGCAGCAGCTCAATCCCTCAAGCCTGGAATGGCAGTGG
TTACTGGGGCTAGTCTGAAGACCAAGTCCCAACTCACGGACGCCATCAAG
GAATCATGTCTCCCCAAGATGCTCTGCGAACTGGCCTCCAAGGCGGATTA
CCAACTCAGCGAAAAGGAGCGGGAACTGCTAAGACTGATCAGATCTCCAA
CAATGCCCTGGATGATGAACATGCCGCCGAGCAAATGGTATTTTGCGGCC
CACATGGGCGAACTCATGCGTCACACTGGCGACAATCTCAGCGGACCTAT
GGGGTGCGCCAATCTCTGGCCAAATTGCCCGATCAGCTCCAAGAAGCTGA
TGAAGCTCAGCTACAAAGTGAGGGTCGCAAGCTTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCA
TAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCT
CACCAATAAAAAACGCCCGGCGGCAACCGGAGCGTTCTGAACAAATCCAG
ATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGC
TCGATATCAAATTACGCCCCGCCCTGCACTCATCGCAGTACTGTTGTAAT
TCATTAAGCATTCTGCGACATGGAAGCATCACAAACGGCATGATGAACTG
ATCGCAGCGGCATCAGCACCTTGTCGCTTGCGTATATGTTTGCCCATGGG
TGAAACGGGGCGAAGAAGTGTCCATATTGCCACGTTTAAATCAAACTGGT
GAACTCACCCAGATGCTGAAACGAAAAACTATTTCTCATAATCCTTAGGA
TTGGGCCAGGTTACGTAACCG
UFO03979.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gk-RB | 1318 | CG13695-RB | 388..1005 | 9..626 | 3075 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18139789..18140020 | 9..240 | 1160 | 100 | Plus |
| 3L | 28110227 | 3L | 18143500..18143703 | 239..442 | 1020 | 100 | Plus |
| 3L | 28110227 | 3L | 18144919..18145105 | 440..626 | 920 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:50:32 has no hits.
UFO03979.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:54:52 Download gff for
UFO03979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gk-RB | 386..1007 | 9..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:21 Download gff for
UFO03979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gk-RB | 388..1009 | 9..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:36 Download gff for
UFO03979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gk-RB | 388..1009 | 9..632 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:36 Download gff for
UFO03979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18139789..18140020 | 9..240 | 100 | -> | Plus |
| 3L | 18143502..18143703 | 241..442 | 100 | -> | Plus |
| 3L | 18144922..18145109 | 443..632 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:21 Download gff for
UFO03979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18132889..18133120 | 9..240 | 100 | -> | Plus |
| arm_3L | 18136602..18136803 | 241..442 | 100 | -> | Plus |
| arm_3L | 18138022..18138209 | 443..632 | 97 | == | Plus |
