UFO03980.5prime Sequence
1140 bp (1021 high quality bases) assembled on 2009-02-13
> UFO03980.5prime
CAGTCGACATGTCTGTGTGGACCACGGCCAACAATTCGGGCCTAGAGACG
CCAACAAAGTCGCCGATCACGTCGTCGGTTCCGCGGGCAGCGAGAAGTTC
TGCAGTGATCACCACTGGAAATCACCAGCAGCACCACTTCCAGCACGTTG
TGGCCGCCGCCGTTGCAGCCGCCACTTCAGTGGCCACCGGTCATCAGTTC
CAGCAACAGTTCCCGCTGCACGCACATCCGCATCCACAGCACCACAGCAA
CAGTCCCACGGGTAGCGGCAGCAACAGCAACAACAGCGCAGGTTTCCAGC
GCACCAGCATCAGCAACTCGCTGCTGCAGTTCCCGCCGCCCCCGCCCCCT
TCCTCACAGAACCAGGCGAAGCCGCGCGGACACCATCGCACCGCCAGCAG
CAGCATGTCGCAGTCCGGCGAGGATCTCCACTCGCCCACCTACCTGTCCT
GGCGGAAGCTCCAGCTTAGTCGGGCCAAGCTAAAGGCATCCAGCAAGACG
TCCGCCCTGCTCTCCGGATTCGCCATGGTGGCGATGGTGGAGGTGCAACT
GGATCACGATACGAATGTACCACCGGGCATGCTGATAGCCTTCGCCATCT
GCACCACCCTCCTGGTGGCGGTGCACATGCTGGCCCTGATGATCAGCACC
TGTATCCTGCCAAATATTGAGACGGTGTGTAATTTGCATAGTATTTCCCT
GGTCCACGAATCGCCACACGAGCGTCTCCATTGGTACATTGAAACGGCGT
GGGCATTCTCCACGCTGCTGGGACTCATACTCTTTCTACTGGAGATAGCC
ATCCTGTGCTGGGTGAAATTCTATGACCTAAGTCCGCCGGCGGCTTGGTC
AGCGTGTGTGGTCCTCATACCGGTGATGATCATCTTTATGGCCTTCGCCA
TTCACTTCTATCGCTCCCTGGTGTCGCACAATATGAGGTGACAGTCTCGG
GCATCCGTGAGCTGGAGAATGCTTCATGTAGCAAATGGATCAGATCATTT
GAGCATCACAATTACATACGAAATAATGCAATGAACTATGGCGCATCGGG
ACATTGTCGCAAGCTTTCTAGAACATTCGTTGGCGCGCGGCCAGGTAGTG
GTCATAATCTATCCTAAACTAATCTATATCTACTTAGCTA
UFO03980.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| olf186-F-RF | 2407 | CG11430-RF | 563..1616 | 8..1058 | 5010 | 98.7 | Plus |
| olf186-F-RA | 2080 | CG11430-RA | 236..1289 | 8..1058 | 5010 | 98.7 | Plus |
| olf186-F-RB | 2632 | CG11430-RB | 788..1841 | 8..1058 | 5010 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17859257..17859778 | 527..1047 | 2265 | 97.7 | Plus |
| 2R | 25286936 | 2R | 17851097..17851460 | 8..371 | 1820 | 100 | Plus |
| 2R | 25286936 | 2R | 17857640..17857800 | 370..530 | 805 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:18:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6730..6958 | 119..350 | 253 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6952 | 87..313 | 247 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6915 | 204..405 | 222 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6887 | 166..317 | 205 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6862 | 192..319 | 203 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2518 | 192..405 | 192 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2314..2505 | 121..317 | 189 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2498 | 213..406 | 185 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6819 | 224..328 | 183 | 71.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6882 | 264..405 | 177 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2539 | 192..405 | 166 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2424 | 201..317 | 164 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2747..2857 | 203..318 | 162 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2467 | 242..405 | 154 | 59 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1155 | 193..288 | 140 | 61.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1052..1148 | 226..317 | 137 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2588..2643 | 262..317 | 118 | 67.9 | Plus |
UFO03980.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:54:52 Download gff for
UFO03980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf186-F-RA | 219..1276 | 8..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:30 Download gff for
UFO03980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf186-F-RB | 788..1845 | 8..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:56:42 Download gff for
UFO03980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf186-F-RB | 788..1845 | 8..1064 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:56:42 Download gff for
UFO03980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17851097..17851460 | 8..371 | 100 | -> | Plus |
| 2R | 17857642..17857797 | 372..527 | 100 | -> | Plus |
| 2R | 17859258..17859778 | 528..1047 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:30 Download gff for
UFO03980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13738602..13738965 | 8..371 | 100 | -> | Plus |
| arm_2R | 13745147..13745302 | 372..527 | 100 | -> | Plus |
| arm_2R | 13746763..13747283 | 528..1047 | 97 | == | Plus |
