UFO03981.5prime Sequence
880 bp (103 high quality bases) assembled on 2009-02-13
> UFO03981.5prime
CAATCCACATGGGCACCACGACAAAGTTTGTGAACGAGTTCTGTGATATT
ATCGATTCCTATGGCGGGCGAAATAAGGTGATGAAGGCATTGTGCTACAG
TGCCCAACTGGTGGCTGGCTACCATGCCAAGCGGAATCCGGAACTAGCCA
AGCGATACTCCACCGCCAGCTCAAGGATCTCAGGGGCGAGAGCCTCACTG
CGTCTCATCGACGACATACCCATGATCCAATATGCTTTGGAGTATGGCTT
GGGCGACAATGACCCCGATCGCGACATGCCAGTGCTGGGAGTGACGGCCA
ACTTTGTGGATTTGCTCTACTATCCCATCGAGAAGGTGTGCTGGCTGGCC
GAACACAAAATTGTGGATGTCAAGAATGCGGATAACTGGGACAATGTCAA
CTCCATATTCTGGGTGCTTTCGGTGTACCTGAACCTCATGAGGACAATGC
GGAATTTTTCACTGAATCAGGAAAAGCTGAACCGAACGAATAATATAAAC
GAATTGGATGTGAAAACGTTGACCAAGCACCGCCTGGAGATGGTGTCCAT
CGCTCGGATCTCACTCCACTTTGTGCACGCCGTCAGCACGCTGCCGAAAG
GATATTTGTGGGGCGGCAAGCTGTCCACCCTGCAGGTGGGTGCTATTGGC
ACCTTATCCGCTGGCCTGGGCATCTACCAGATCTTTGCCAAGAGAATACT
GAGCAAGGCAAGCTTTCTATACCATTCGTTTGGAGCGCGGGCGCATTGAA
GTGATCTTAATCACAATCATACTCCTATTCATAATCACAACTATCCTATG
AGATCCCGCTCATGACTAGCGCTTGGCATTCTCACCAATAAAGAACGCCC
GGGGGTACCGAGCGTTCTGATCGAATCTAG
UFO03981.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13827-RA | 989 | CG13827-RA | 114..812 | 9..707 | 3255 | 97.7 | Plus |
| CG13827-RB | 909 | CG13827-RB | 100..732 | 75..707 | 2940 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23259675..23260042 | 76..443 | 1675 | 97 | Plus |
| 3R | 32079331 | 3R | 23260221..23260425 | 503..707 | 965 | 98 | Plus |
| 3R | 32079331 | 3R | 23258478..23258548 | 9..79 | 340 | 98.6 | Plus |
| 3R | 32079331 | 3R | 23260100..23260161 | 441..502 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:45:32 has no hits.
UFO03981.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:16 Download gff for
UFO03981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13827-RA | 101..808 | 1..707 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:27 Download gff for
UFO03981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13827-RA | 105..812 | 1..707 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:28:05 Download gff for
UFO03981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13827-RA | 105..812 | 1..707 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:28:05 Download gff for
UFO03981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23258469..23258546 | 1..77 | 93 | -> | Plus |
| 3R | 23259677..23260041 | 78..442 | 96 | -> | Plus |
| 3R | 23260102..23260161 | 443..502 | 100 | -> | Plus |
| 3R | 23260221..23260425 | 503..707 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:27 Download gff for
UFO03981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19085943..19086147 | 503..707 | 98 | | Plus |
| arm_3R | 19084191..19084268 | 1..77 | 93 | -> | Plus |
| arm_3R | 19085399..19085763 | 78..442 | 96 | -> | Plus |
| arm_3R | 19085824..19085883 | 443..502 | 100 | -> | Plus |
