UFO03983.5prime Sequence
1103 bp (990 high quality bases) assembled on 2009-02-13
> UFO03983.5prime
CAGTCGACATGCCAAATAAATCCGAGGAGCTGGGCGAAACGCAACTGACC
AAAAGACAGAGGAGGAAGCAGACGATCTGGACGCGGGAGAAGATCGCCAA
GCTAATCGAACTTTACCGCTCGTCGGACTGCTTGTGGAACCACTATTCCG
AGCTATATAAAAACAAGGATTGCAGGGCTAAAGCCATCGAATCCATCTGC
GCTTCGCTTGAAATAACGAAACACGACTATGGCAAGAAGGTGCACAACCT
GCGCAATCAATTCAATGCAGAGCTCAAGAAGTTGGAGAGGAGGCTCGAGG
AGTCTGGAGGAGATCGAGATTCGGAGAAGGCTTGTCGATGGGAGCACTTC
AAGACGTTGATGTTCCTACGATCTGTTATAGAACCACGACCAGGCTATCA
ACAAGGTGCTCCGGGCAAGAAATTGGTATCGAAGCTGGACATGTGCTACC
CGGATCAGGATGTGGAAAAGCAGAGCCAATCCTCGATAGAAAGTCTGGAA
TCCATGATCATAGAGAACGATGCAGAAATCTGTCAGCCTCCGAAGGTCAG
CGAACCCATTCCTCCGATGCCTCCTGAACCTGCGCCGTCTTCCAAATTCG
TTGATCCAAATCGAACTGTCGAAGCTCCAGCTGCTCCCTCTCCCTTCCAC
TTACCATTAAGTGGTCGTGATCAATGGGACGCATTTGGCGAACTAATCGC
CAGTGAATTCCGTAACCTGAACTCTGAAGTTTCGCGCAAGAGGCTGAAGC
GGAAAATAATGCAAGTTATGCTGGAAGTCGGCGAAGAAGATGATCTTACA
AACAGTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAG
TGGTCATAATCATAATCATAATCATAATCATAATCACACTAGCCTAGAGA
TCTGGTCATGACTAGTGCTTGATTCTCACAATAAAACGCCCGGCGCACGA
CGTTCTGAACAATTCAGATGGAGTCTGAGTCATACTGGATCCTTCAACAG
GAGTCAGCGAGCTCGAAATCAAATACGCCCCGCCCTGCCATCATCGCGTA
CTGTTGTATCATAGCCATCTGCGACTGAGCCATCCAAACGCATGATTGAA
CTG
UFO03983.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10904-RB | 1070 | CG10904-RB | 68..865 | 9..806 | 3990 | 100 | Plus |
| CG10904-RA | 950 | CG10904-RA | 68..865 | 9..806 | 3990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23969596..23970006 | 419..9 | 2055 | 100 | Minus |
| 2R | 25286936 | 2R | 23969146..23969534 | 806..418 | 1945 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:05:00 has no hits.
UFO03983.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:00 Download gff for
UFO03983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10904-RA | 59..861 | 1..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:44 Download gff for
UFO03983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10904-RA | 63..865 | 1..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:01 Download gff for
UFO03983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10904-RA | 63..865 | 1..806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:01 Download gff for
UFO03983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23969146..23969532 | 420..806 | 100 | <- | Minus |
| 2R | 23969596..23970011 | 1..419 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:44 Download gff for
UFO03983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19856669..19857055 | 420..806 | 100 | <- | Minus |
| arm_2R | 19857119..19857534 | 1..419 | 99 | | Minus |
