UFO03984.5prime Sequence
1119 bp (995 high quality bases) assembled on 2009-02-13
> UFO03984.5prime
CAGTCGACATGAAAATTGGCTTGTGCGCATTCAGCGGGTACAAAATCTAC
CCCGGTCATGGCAAGACCATGGTCAAGATCGATGGCAAGTCGTTCACCTT
CCTGGACAAGAAGTGCGAGCGCTCCTACCTGATGAAGCGCAATCCCCGCA
AGGTTACGTGGACCGTGCTGTACCGCCGGAAGCACCGCAAGGGAATCGAG
GAGGAGGCCTCCAAGAAGCGCACCCGCCGCACCCAGAAGTTCCAGCGCGC
CATCGTCGGTGCCTCGCTGGCCGAGATTCTGGCCAAGCGTAACATGAAGC
CCGAGGTGCGCAAGGCGCAGCGCGACCAGGCCATCAAGGTGGCCAAGGAG
CAGAAGCGTGCCGTCAAGGCCGCCAAGAAGGCTGCTGCCCCCGCTCCCGC
TAAGAAGTCGGCGCCCAAGCAGAAGGCCGCCAAGGTCACGCAGAAGGCTG
CTCCCCGCGTCGGAGGCAAGCGGGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA
TTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTG
AATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCA
TGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCA
AAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAACATATTCCTC
ATAAACCCTTTAGGAATAGGCCCAGGTTTTCACCGTAACCCCGCCCACAT
CTGCGATATATTGTGTTAGAACTGCTCGAAATTCGTCTGCTATTCACTCA
GAGCGAATGAAACCGTTTCAGTTGCTCATGGGAAACGGTGTTTACACAGG
GTGAACACTCAATCCCCTA
UFO03984.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL24-RC | 829 | CG9282-RC | 72..536 | 9..473 | 2325 | 100 | Plus |
| RpL24-RB | 1226 | CG9282-RB | 33..497 | 9..473 | 2325 | 100 | Plus |
| RpL24-RA | 790 | CG9282-RA | 33..497 | 9..473 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13394416..13394801 | 473..88 | 1930 | 100 | Minus |
| 2L | 23513712 | 2L | 13394865..13394940 | 89..14 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:08:05 has no hits.
UFO03984.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:54:59 Download gff for
UFO03984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL24-RA | 49..523 | 1..477 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:38 Download gff for
UFO03984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL24-RA | 26..500 | 1..477 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:20 Download gff for
UFO03984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL24-RA | 26..500 | 1..477 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:20 Download gff for
UFO03984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13394416..13394799 | 90..473 | 100 | <- | Minus |
| 2L | 13394865..13394944 | 7..89 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:38 Download gff for
UFO03984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13394416..13394799 | 90..473 | 100 | <- | Minus |
| arm_2L | 13394865..13394944 | 7..89 | 96 | | Minus |
