UFO03985.5prime Sequence
1125 bp (1012 high quality bases) assembled on 2009-02-13
> UFO03985.5prime
CAGTCGACATGAGCAGCTCCGAGGAAGTCTCCTGGGTCACCTGGTTCTGT
GGACTTCGTGGCAATGAGTTCTTCTGCGAGGTGGATGAGGACTACATACA
GGATAAATTCAATTTAACTGGTTTAAATGAGCAGGTACCCAACTATCGGC
AAGCGTTGGACATGATCTTGGACTTGGAACCGGAGGACGAGCTCGAGGAC
AATCCACTGCAGTCCGACATGACCGAGCAGGCCGCCGAGATGCTCTACGG
CCTCATACACGCCAGATATATACTAACAAATCGCGGCATCGCTCAAATGA
TCGAGAAATATCAAACTGGCGATTTCGGACATTGTCCACGTGTCTACTGT
GAAAGTCAGCCCATGCTGCCATTGGGTCTGTCGGACATCCCCGGCGAGGC
AATGGTTAAGACCTATTGCCCCAAGTGCATTGACGTGTACACACCAAAAT
CGTCGCGTCACCACCATACCGATGGCGCCTATTTCGGCACTGGATTTCCA
CACATGCTCTTCATGGTGCATCCCGAATATCGTCCCAAGCGTCCTACTAA
TCAGTTTGTTCCAAGGCTATATGGATTTAAAATACACAGCTTAGCTTATC
AAATTCAGCTGCAGGCAGCAGCCAATTTTAAAATGCCACTACGAGCGAAA
AACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGG
TCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGAT
CCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGG
CAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGG
ATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCC
TGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATG
AAGCCATCACAAACGGCATGATGCATCCTGAATCGCCAGCGGCATCCAGC
ACCTTGTCGCCCTTGGCGTATAATATTTGCCCATGTTGTAAACGGGGGCG
AAAAATTGTCCATATTGGCTCCGTTTTAATTCGAATCGGTGTAAACTCCT
CCATGGATTGCTTGACACAAAAAAC
UFO03985.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CkIIbeta-RH | 2376 | CG15224-RH | 37..681 | 9..653 | 3225 | 100 | Plus |
| CkIIbeta-RG | 997 | CG15224-RG | 72..716 | 9..653 | 3225 | 100 | Plus |
| CkIIbeta-RD | 966 | CG15224-RD | 41..685 | 9..653 | 3225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11793973..11794167 | 183..377 | 975 | 100 | Plus |
| X | 23542271 | X | 11794818..11795009 | 375..566 | 960 | 100 | Plus |
| X | 23542271 | X | 11793796..11793900 | 79..183 | 525 | 100 | Plus |
| X | 23542271 | X | 11795103..11795186 | 564..647 | 420 | 100 | Plus |
| X | 23542271 | X | 11793447..11793521 | 9..83 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:04:07 has no hits.
UFO03985.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:14 Download gff for
UFO03985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIbeta-RC | 396..1051 | 1..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:11 Download gff for
UFO03985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIbeta-RD | 36..688 | 4..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:39 Download gff for
UFO03985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIbeta-RD | 36..688 | 4..657 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:39 Download gff for
UFO03985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11793974..11794165 | 184..375 | 100 | -> | Plus |
| X | 11794819..11795008 | 376..565 | 100 | -> | Plus |
| X | 11795105..11795191 | 566..652 | 97 | == | Plus |
| X | 11793440..11793518 | 1..80 | 96 | -> | Plus |
| X | 11793798..11793900 | 81..183 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:11 Download gff for
UFO03985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11688007..11688198 | 184..375 | 100 | -> | Plus |
| arm_X | 11688852..11689041 | 376..565 | 100 | -> | Plus |
| arm_X | 11689138..11689224 | 566..652 | 97 | == | Plus |
| arm_X | 11687473..11687551 | 1..80 | 96 | -> | Plus |
| arm_X | 11687831..11687933 | 81..183 | 100 | -> | Plus |
