UFO03988.5prime Sequence
1148 bp (1035 high quality bases) assembled on 2009-02-13
> UFO03988.5prime
CAGTCGACATGGCGGGCTGGCGAGGACGAGGCCTACGCGCCACGCTGCTG
GCCGTGCTCGCGTTACTCTCGGTCACTCACTCGGTGCGCATCACCAACCT
GCGGGTGCCACGCACCTACACGCTGTTCCGAGACCACGAACCCGATCCTC
TGGTGCTCGACTGCGAGGTGGAGATCGGGCCGCGGGAGCAAGGATTCGTC
CTCAAATGGCTGTTCAATAACCACTCCATCTACCAGTGGATACCATCGGT
CAAGGGGTTCGCCATGGGCTTCATGAAGTCGAAGATAGACACCAAAATAT
TCACTATGGAGGGCAGTCCCGGTGTTATATCGATAAAGAATCCCGACTGG
AACATGACGGGGGAGTACACCTGTGCAGTGCAGACCTTCGAGTCCACGGA
TAAGCGGAGTGCCCGCCTGCAAATAATCGTTCCTGAATCGGATTTCATGC
TGGAAGCGCGGATGAGCGGTTCGCGTATGGACGTGGACATCATGTGTGCG
GTCCAGCACGTCTTCCCGCAACCCATGCTGTCTGTCATGTTTGACACCCA
CATACTGGACTCGGTACTGACGCAGTTGGACCAGGACCCCAGTGGCCTCT
ACAGCATGACCGTTCGCACCCGCATTCCTAGAGATCAACTCGAGTCCCCC
ACCCCAATCACCTGTGCGTTTATCCTAGTTGGCACCAACTACACCAAGCG
CCGGGAGACTATTTTCTATGATAAGGCCTCAACTATACAACGCAAGTGGA
CAACGGTCGCCGTAGTCATGTCCATCGCATCCTTAGCTCTAAGCAGTGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAA
TCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGT
CATGACTAGTGCTTGATTCTCACAATAAAAACGCCCGGCGGCAACCGAGC
GTTCTGAACAATCCAGATGGAGTTCTGAGGTCATTACTGGATTTTTCACA
GGAGTCCAAGCGAGCCTCGATTCTCAATTACGCCCCGCCTGCCACCTATC
GCAGTACTGTTGTAACTTCATTAGCATTCTGCCGACATGGAAGCCATCAC
AAACGGCATAAATGAACCTGAATCGCCAAGTTGGCATCAGTACTTGTG
UFO03988.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13532-RA | 1918 | CG13532-RA | 606..1395 | 8..797 | 3950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22871941..22872136 | 72..267 | 980 | 100 | Plus |
| 2R | 25286936 | 2R | 22873455..22873641 | 539..725 | 920 | 99.5 | Plus |
| 2R | 25286936 | 2R | 22872229..22872392 | 266..429 | 820 | 100 | Plus |
| 2R | 25286936 | 2R | 22873267..22873378 | 429..540 | 560 | 100 | Plus |
| 2R | 25286936 | 2R | 22873827..22873904 | 720..797 | 390 | 100 | Plus |
| 2R | 25286936 | 2R | 22871795..22871859 | 8..72 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:19:24 has no hits.
UFO03988.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:13 Download gff for
UFO03988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13532-RA | 497..1299 | 1..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:56 Download gff for
UFO03988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13532-RA | 599..1401 | 1..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:54 Download gff for
UFO03988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13532-RA | 599..1401 | 1..806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:54 Download gff for
UFO03988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22871788..22871859 | 1..72 | 94 | -> | Plus |
| 2R | 22871942..22872135 | 73..266 | 100 | -> | Plus |
| 2R | 22872230..22872392 | 267..429 | 100 | -> | Plus |
| 2R | 22873268..22873376 | 430..538 | 100 | -> | Plus |
| 2R | 22873455..22873636 | 539..720 | 100 | -> | Plus |
| 2R | 22873828..22873910 | 721..806 | 95 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:56 Download gff for
UFO03988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18760791..18760899 | 430..538 | 100 | -> | Plus |
| arm_2R | 18760978..18761159 | 539..720 | 100 | -> | Plus |
| arm_2R | 18761351..18761433 | 721..806 | 95 | == | Plus |
| arm_2R | 18759465..18759658 | 73..266 | 100 | -> | Plus |
| arm_2R | 18759311..18759382 | 1..72 | 94 | -> | Plus |
| arm_2R | 18759753..18759915 | 267..429 | 100 | -> | Plus |
