UFO03992.5prime Sequence
1138 bp (1004 high quality bases) assembled on 2009-02-13
> UFO03992.5prime
CAGTCGACATGTTTAAGCTATCGCTCTGCCTGCTCGCCGCTCTGATGCTG
GCCAATGTGTATGCGGACAACATAAACAAGGATGCCGTGATCACCCGCGA
GGATGTTAATCCTGCCGACGCCGAGGGCAACTACCAATACGCCTTCGAGA
CCAGCAATGGTATTCAGGCCCAGGAGGCCGGAAACGTCAATGGCATTAGC
GGAAGCAGCTCTTACATCTCCCCCGAAGGCGTCCCCATCTCACTGACCTA
CGTCGCCGATGAAAACGGCTTCCAGCCTCAGGGCGATCACCTTCCCACCG
CTCCCCCAATCCCGGAGGCCATCCTCCGCGCCCTGGAATACATCGCCGCC
CACCCTCCACAGCCCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGC
CCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACT
AGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAA
AACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGA
GGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAAT
TACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCAT
TCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCA
GCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAA
ACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGT
GAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACC
CTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAA
AATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCCCCTCCAGAGCG
ATGAAAACGTTTCAGTTTGCTCATGGAGAACGGTGTACAAGTGACCACTA
TTCCCAATATCAACAGCTCACGTCTTTTCATTGCTCACGAAATTCGGATG
AACATTCATCAGCGGCAATATGTGATACTAGGCCCGGATTAACCTGGGCC
TATCTAACGGTCTTTAAAAAGGGCGTATATCTACTGTA
UFO03992.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr78Cc-RA | 522 | CG7658-RA | 42..398 | 9..365 | 1785 | 100 | Plus |
| Edg78E-RB | 546 | CG7673-RB | 174..403 | 115..344 | 250 | 75 | Plus |
| Edg78E-RA | 967 | CG7673-RA | 174..403 | 115..344 | 250 | 75 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21300703..21301047 | 21..365 | 1725 | 100 | Plus |
| 3L | 28110227 | 3L | 21297327..21297556 | 344..115 | 250 | 73.9 | Minus |
| 3L | 28110227 | 3L | 6161392..6161450 | 240..298 | 190 | 88.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:20:59 has no hits.
UFO03992.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:11 Download gff for
UFO03992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr78Cc-RA | 27..393 | 1..369 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:25 Download gff for
UFO03992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr78Cc-RA | 35..401 | 1..369 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:58:18 Download gff for
UFO03992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr78Cc-RA | 35..401 | 1..369 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:58:18 Download gff for
UFO03992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21300703..21301047 | 21..365 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:25 Download gff for
UFO03992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21293803..21294147 | 21..365 | 100 | == | Plus |
