UFO03996.5prime Sequence
910 bp (-103 high quality bases) assembled on 2009-02-13
> UFO03996.5prime
CAATCCACATGGGTTTCGTTAAGGTAGTCGAGAACAAGCACTACTTTAAA
AGGTACCAAGTCAAGTTCCGAAGGCGTCGCGAAGGAAAGACCGATTACTA
TGCCAGGAAACGCCTAACATTTCAGGACAAGAACAAGTACAACACTCCCA
AGTACCGTTTGATCGTACGTTTGTCCAACAAGGACGTCACATTACAGATC
GCCTATGCTCGCATCGAGGGTGATCGCGTGGTGTGCGCTGCTTATTCCCA
TGATCTTCCCAAATACGGGATCCAAGTTGGATTGACCAACTACGCTGCTG
CTTACTGCACAGGCCTGCTGGTCGCCCGTCGTGTCCTTAACAAGTTGGGA
CTGGACTCCCTATATGCAGGATGCACTGAAGTGACTGGTGAGGAGTTCAA
CGTCGAGCCTGTTGATGACGGCCCAGGGGCATTCCGTTGCTTCTTGGATG
TTGGACTCGCTCGTACTACAACTGGTGCCCGTGTGTTTGGCGCTATGAAG
GGAGCAGTTGATGGTGGTCTAAACATACCTCACTCTGAGAAACGCTTTCC
TGGGATACTCTGCTGAAACCAGAGCTTTAATGCCGATGTGCATCACGCTC
ATATATTTGGCCAGCACGTTGCAGACTATATGCGTTCTTTGGAGGAAGAG
GATGAGGAGATGTTCAAATGCAGTTTACCCGATACATCAAGTTGGGCATT
CGTGCTGATGATCTTGAGGATATCTATAAAAGAGCCCACCAGGCAATTCG
TAACGACCCTACACACCAAGGTCACGCTAAAAGTCTTTCTGCCGTTACGA
AGAACATGTGGATGCTACCAAACTCACGAACGATCAACGGATGACTATGA
TTGCAGCTCATAGGCAGCTATGCTGCAGCTGCATCTGAAACTGATGCTGC
AGCTTTCTAG
UFO03996.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL5-RG | 1945 | CG17489-RG | 94..990 | 9..898 | 3810 | 95.8 | Plus |
| RpL5-RH | 3835 | CG17489-RH | 346..1242 | 9..898 | 3810 | 95.8 | Plus |
| RpL5-RB | 1024 | CG17489-RB | 57..953 | 9..898 | 3810 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22535617..22536054 | 712..276 | 1940 | 97.7 | Minus |
| 2L | 23513712 | 2L | 22536116..22536379 | 274..11 | 1230 | 97.7 | Minus |
| 2L | 23513712 | 2L | 22534913..22535063 | 862..713 | 405 | 86.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:27:44 has no hits.
UFO03996.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:15 Download gff for
UFO03996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL5-RB | 94..974 | 9..883 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:59 Download gff for
UFO03996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL5-RA | 80..960 | 9..883 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:13 Download gff for
UFO03996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL5-RB | 57..937 | 9..883 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:13 Download gff for
UFO03996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22535617..22536054 | 276..712 | 97 | <- | Minus |
| 2L | 22536115..22536381 | 8..275 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:59 Download gff for
UFO03996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22428349..22428786 | 276..712 | 97 | <- | Minus |
| arm_2L | 22428847..22429113 | 8..275 | 97 | | Minus |
