UFO04001.5prime Sequence
1133 bp (986 high quality bases) assembled on 2010-09-10
> UFO04001.5prime
CAGTCGACATGTCTCTAAAAGAGGATCCAAGCCAGCGCACGTGCACAGGA
TTTACGATCGGATTCAAACTGCTGTCCAAGAAACTGGCGGAAAACATCCT
AGGCACCGGAATTGTGGATTTTGAGAATTGTCTCTATGAGTGCCAATTTG
CCAGCGATAGCATTGAAGGCTTTTCCGTGGGCCTCCTTGGAGGAGAGTTT
AAACTGAAGTCCAAATCGAACACCAACTGGTTGGAATTTGTGCTCAGACC
AAAGCTCTTAAGCTGGTCTCAGTCCAAGCAGGATGAAGCAAAGGTGAAGT
CACTAGGTTTGGTTAATGTGGAAAAGTACAATGATCTGTACAAGGAGTTG
AAACAGAGGCATTCACAACGCCTGCTGGAACACTGGAAGACCGCACAGGA
GTCCACGGATCCGCTCAAGTTCATTTACGAGGATTTGGCTATCGCTGCTT
ATCTTATAGTTTTGTGGAGTCAAACACAATCGGAGCCCACTGCCTTCGCT
GATTTGGGTTGTGGAAACGGTCTGTTAGTTCATGTCCTCAACGCCGAGGG
CTACAAAGGGTATGGCTACGATATAAGAAAGCGAAAGCTATGGTCCCTCT
ATCCACCGGATACCCAAAGGAGCCTCATTGAAAAGGCCGTGGAGCCCAAC
AGCTTCCGCTTGGATTTTCCGGGTGTGGATTGGTTGATTGGTAACCATTC
GGACGAGTTGTCTCCTTGGCTACCGGTTTTGGCTGGTCGTTTGAACATTA
ACTATTTCCTACTGCCCTGCTGTCCCTTTGAACTGTCGGGAGCCAAGTTT
CGCAGGCGGAATACGAAGATAAGTGCCTACCAGGATTTCTTTCAATACGT
CACTCAGGTCTCTCATGAATGTGGCTATGAGATCCTAAAGACCGTTCTAA
AAATACCCAAGCACCATGCGATTGCCTCTGCTGTAATTAGAAAAAGCCTC
AAAGGCTATTGAAGATCTGGAGTACTTTGTCCAAGAAGAGCTTAGAAGTA
TAAGACCGGAGAATGCTAAAATTAAGCTGCGCCGGGAAGGATGAAAGGCG
TTCGAAATTGCACGCAGGTGGAATAGACCATATTTGATGTCTAGGTCTAG
ATCTTCAACTGAATCCGGAATCTACCGAAGAAT
UFO04001.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:29:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9386-RA | 1652 | CG9386-RA | 176..1302 | 9..1131 | 5070 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:29:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9554092..9555064 | 1089..117 | 4240 | 97 | Minus |
| 3R | 32079331 | 3R | 9555125..9555233 | 117..9 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:29:05 has no hits.
UFO04001.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:46 Download gff for
UFO04001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9386-RA | 148..1243 | 1..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:33:54 Download gff for
UFO04001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9386-RA | 167..1262 | 1..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:55 Download gff for
UFO04001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9386-RA | 167..1262 | 1..1094 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:55 Download gff for
UFO04001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9554086..9555063 | 118..1094 | 97 | <- | Minus |
| 3R | 9555125..9555241 | 1..117 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:33:54 Download gff for
UFO04001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5379808..5380785 | 118..1094 | 97 | <- | Minus |
| arm_3R | 5380847..5380963 | 1..117 | 96 | | Minus |
