UFO04002.5prime Sequence
1122 bp (1044 high quality bases) assembled on 2009-02-13
> UFO04002.5prime
CAGTCGACATGTCGAAGAACTGCATGATAACGTTCGACCAGAATGAGCAC
GGCACCTACTTCACCGGCCAGGTGATAACCGGCAAGGTGATTGTCAATCT
GAACAAGACCAAGAAACTGCGAGGAATAAAACTGCAAATAAGTGGCTATG
CGCAAGCCCAGTGGCGCATCCGCAGACATGGTAAGGCGGTGGCAATCCAA
AACCCCAAGAAGCGATCAAAGCACCAGTACAGCGGGCGGGAGGACTATAT
AGCCTCCACCACTTACCTCATGGGTTCCGAGCAGGGCAGCAACTTTAACA
TGGACGCCGGCACGTACACCTACACTTTTGCTTGCCCCATTCCCAGCCAC
TGCCCCTCGTCCTTCGAGGGTGCCTATGGACACATCCGGTATCTGGCCAA
GGTCACCTTTTTGAAGCCAGGAGCTTCCAATCGCACCCACAACGTGGGCT
TCACTGTGCTAAAGCTGCTGGACTTGAACCAGGAGACCAAGATGCTCCGG
GAACCGGCGAGCAATGAAGCCGTGGAACACTTTTGCCTGATGCACACGAA
GCCCGTGCAGTTGAAGGTCACTCTCCAGCAGCAGGGCTATGTTCCGGGTC
AGTTCATGTTGATCCACGCCCATGTGCGTAATGACTCCAGCTCCGATTGT
CGGAAGCTACTGATCATGCTGCATTTGAGAGCCACATACACGGCGGATAC
GCCCTCGCTACGCACCACATCCGAGAAGATAATGCTGGTGAAGCGCGAGT
GCGGTCCGGTGGCTCATAATGCGCAGAGGACTTACACGGAAACCCTGAGG
ATTCCGGCAACGGCGCCCACCTGCGAGCACCTAAGCAAGGTGGTGCGCGT
ATCTTACGAAGTGCGTGTGGTGGCTGTTATGAACTGGCTTATGGCTAATC
CCCGGCTCATAATCCCTGTGACTATTGGCAACGTGCCCTGGCAACTGCGG
TGTCGGACGGACTCTGCAACTAACGCTTCCCATCTGGAAGTCGCTGCTGC
GACTGGCATGCACCTCTACAGGTCATGGACTGGCTCAGAATGGCCGCAGC
GGGTCAGCACCTCGCTACGAAATGCCGAGATCTAAAGACCTCAGCTCAGA
TGCAATGATGGAGTTGGAGCTA
UFO04002.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10086-RA | 1864 | CG10086-RA | 93..1189 | 7..1084 | 4935 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7791669..7792502 | 122..954 | 4120 | 99.9 | Plus |
| 3R | 32079331 | 3R | 7790725..7790842 | 7..124 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:09:37 has no hits.
UFO04002.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:06 Download gff for
UFO04002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10086-RA | 80..1152 | 1..1059 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:58 Download gff for
UFO04002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10086-RA | 88..1160 | 1..1059 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:40 Download gff for
UFO04002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10086-RA | 88..1160 | 1..1059 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:40 Download gff for
UFO04002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7790720..7790841 | 1..123 | 97 | -> | Plus |
| 3R | 7791671..7792621 | 124..1059 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:58 Download gff for
UFO04002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3616442..3616563 | 1..123 | 97 | -> | Plus |
| arm_3R | 3617393..3618343 | 124..1059 | 98 | | Plus |
