UFO04003.5prime Sequence
1149 bp (1022 high quality bases) assembled on 2010-09-10
> UFO04003.5prime
CAGTCGACATGAGCGCCACGGATGACTTCCAGAGCTGGCTCAACGAGCAG
CTGCGCAAATTGAACACCGACGAGAACGTTTTCGGTTCGTATATTATTGG
AATTTTGGAGGGCGACGAAACGACAGATGAAAAAACCGAGGCTCTCGAGG
GAATTCTCAGCGAAACAGGTTCCGCCAACATTGACGAACTGGTGGCCACC
ATACTACAAAAGTGGCTACAGAGCCATCCCAGCGCCGATGATCCGCCGAA
AAAAGGTCTGGATATCGATGTGAATGCCCAGTTGGCCAAGTTGCTGGAGC
AACAGAAGCTGCAACCCGCCGTAAACAAGGAGCGTGAATACACCGAAGAG
GAGCGTCGCATCAAGCAGCAGATTCTAGCTCAATACTCCCAGACTGCCGT
TGCCAACGAGGACGACGAGAATTCCGAGGCGGAAAGCGAGGATGACAGTG
GAACGCTCACCAAGAATACCAACAAATCGGATGTCCAGGCGCTAGCCAAG
GAAAAGCGGGAGCAGGCCCGAATGGATAGTGCGGCCAAAAAGCAAAAGGA
CAAAGAGGATCGGGAAAAGCAAAAGCAACTGCGCGAGGAAAAGAAGGAGA
AACGCAAAACCGTCAAAGGCGAACGGCGTCGAGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGGAGATCCTGGTCATGACTAGTGCTT
GGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGGAGCGTTCTGAACA
AATCCAGATGGAGTTCTGAGGTCATTTACTGGATCTATCAACAGGAGTCC
AAGCGAGCTCGATATCAATTACGGCCCCGCCCTGCCACTCATCGCAGTAC
TGTTGTAATTCATTAAGCATTCTGCCGACATGGAAAGCCATCACAAACGG
CATGATGAACCTGAATCGCCAGCGGCATCAACACCTTTGTCGTCTTGCGT
AAAAAATTGGCCAATGGTGAAAACGGGGGGCGAAGAAGTTGTCCATATTT
GGCCAGGTTTAAATCGAAACTGGTGAACTCCACCCAGGGATTGGCTGAAA
CAGAAAAACATTTTCTCAAATAACCCTTAGGAAATTAGGCCAGCTTCCC
UFO04003.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:29:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9586-RB | 936 | CG9586-RB | 130..754 | 8..632 | 3125 | 100 | Plus |
| CG9586-RC | 966 | CG9586-RC | 130..514 | 8..392 | 1925 | 100 | Plus |
| CG9586-RC | 966 | CG9586-RC | 542..784 | 390..632 | 1215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:29:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9165603..9165845 | 632..390 | 1215 | 100 | Minus |
| 2L | 23513712 | 2L | 9165943..9166164 | 392..171 | 1110 | 100 | Minus |
| 2L | 23513712 | 2L | 9166223..9166385 | 170..8 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:29:02 has no hits.
UFO04003.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:45 Download gff for
UFO04003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9586-RB | 53..688 | 1..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:33:53 Download gff for
UFO04003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9586-RB | 122..757 | 1..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:54 Download gff for
UFO04003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9586-RB | 122..757 | 1..636 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:54 Download gff for
UFO04003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9165943..9166164 | 171..392 | 100 | <- | Minus |
| 2L | 9166223..9166391 | 1..170 | 97 | | Minus |
| 2L | 9165600..9165842 | 393..636 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:33:53 Download gff for
UFO04003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9166223..9166391 | 1..170 | 97 | | Minus |
| arm_2L | 9165600..9165842 | 393..636 | 99 | <- | Minus |
| arm_2L | 9165943..9166164 | 171..392 | 100 | <- | Minus |
