UFO04005.5prime Sequence
1119 bp (1018 high quality bases) assembled on 2009-02-13
> UFO04005.5prime
CAGTCGACATGACAATTGCCGAGCACGATAACGTCTTCATCTTTGTGCCA
AATCTGATCGGCTACGCCCGCATCGTTCTGGCCCTGATCGCCTTCTGGTT
CATGTCCACCAACTATGTGATCTCCGGCTGGTGTTATGTAACCTCCGCCC
TCCTGGACGCCGTCGATGGACAAGCAGCCCGAGCCTTTAACCAAAGCACT
CGCTTTGGCGCCATGCTAGACCAGTTGACCGATCGCTGCGGCACCACCGG
CCTACTGGTCACCCTGGCCTACTTCTATCCCCGGTACATGTTCTGGTTCC
AGCTGTCCATCGCCATCGACGTGGCCTGTCACTGGCTCTTCATGCAGACG
AGCGTTGTGGTCGGACGCAGCTCGCACAAGGTGAATGACAACTTCATAAT
GCGATTGTATTACCAGAAGGACATACTCACATTCATGTGCTGCGTCAATG
AGCTGTTTTACGTGTGCTTGTACCTCTTGCATTTCACCTACGGCCCGCTG
ATATTCGGCGCATCGCTCTTCAAGATACTCGCCTTCCTCACGGGTCCCTT
CGCCGTGCTCAAGGCCCTGATCTCGGTGATGCACGCCTACGTGGCGGGCA
TCGATCTGGCGGCCGTGGATGTACGCGAGCGGCAGGAGCGGCGCCAGAAG
TCGGAGCCGGTGAGCGGCAAGAAAGTGGAGGCAAGCTTTCTAGACCATTC
GTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATA
ATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGA
TTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATC
CAGATGGAGTTCTGAGTCATTACTGGATCTATCAACAGGAGTCCAAGCGA
GCTCGATATCAATTACGCCCCGCCCTGCACTCATCGCAGTACTGTTGTAA
TCATTAGCATCTGCGACATGAGCCATCACAAACGGCATGATGACTGATCG
CAGCGGCATCAGCCACTTGTCGCTGGCTATAATATTTGCCATGGTGAAAA
CGGGGGCGAGAGAGTGTCTATTGTCACGGTTAAATCAAACTGGTTACTCC
CAGATGCTGAAGAAACATT
UFO04005.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pis-RA | 1377 | CG9245-RA | 150..821 | 9..680 | 3345 | 99.9 | Plus |
| Pis-RB | 1652 | CG9245-RB | 612..1096 | 196..680 | 2410 | 99.8 | Plus |
| Pis-RB | 1652 | CG9245-RB | 150..336 | 9..195 | 935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15702007..15702185 | 680..502 | 880 | 99.4 | Minus |
| X | 23542271 | X | 15702508..15702662 | 350..196 | 775 | 100 | Minus |
| X | 23542271 | X | 15702264..15702415 | 501..350 | 760 | 100 | Minus |
| X | 23542271 | X | 15703183..15703319 | 196..60 | 685 | 100 | Minus |
| X | 23542271 | X | 15703569..15703621 | 61..9 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:27:30 has no hits.
UFO04005.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:05 Download gff for
UFO04005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pis-RA | 145..820 | 9..684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:51 Download gff for
UFO04005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pis-RA | 150..825 | 9..684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:03 Download gff for
UFO04005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pis-RA | 150..825 | 9..684 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:03 Download gff for
UFO04005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15702002..15702185 | 502..684 | 98 | <- | Minus |
| X | 15702264..15702415 | 350..501 | 100 | <- | Minus |
| X | 15702509..15702662 | 196..349 | 100 | <- | Minus |
| X | 15703184..15703318 | 61..195 | 100 | <- | Minus |
| X | 15703570..15703621 | 9..60 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:51 Download gff for
UFO04005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15596035..15596218 | 502..684 | 98 | <- | Minus |
| arm_X | 15596297..15596448 | 350..501 | 100 | <- | Minus |
| arm_X | 15596542..15596695 | 196..349 | 100 | <- | Minus |
| arm_X | 15597217..15597351 | 61..195 | 100 | <- | Minus |
| arm_X | 15597603..15597654 | 9..60 | 100 | | Minus |
