UFO04008.5prime Sequence
1155 bp (981 high quality bases) assembled on 2010-09-10
> UFO04008.5prime
CAGTCGACATGAAGCCGCAAACAGGACGGATCGTGAAGAGCAGCTCGTCG
AGCTGGCTATGTGCACTTATGCCCCTGATGATCGATGCAGTTTGTGGGAG
AGCTCAGTATGCATCACCTTATGGCAGTGCTTATGCAATTACCACATCCA
ACTACGCTCAATCCAACTATGCCAATCCAGATGTACAATCGATATGGTCG
GGTCCGCCTATCATAGTGAATGATAATCAGTACAGTGCCCAGGAACAGCA
GCAGTATCCAAAAAGTAATGGTTATTATGTTGCGGAACCTGCGTATAGAC
AAGCATATCCAAATTGGAGAAGGGAAGACCCAACACATGCTCCCAATCAC
AACTATAACAATGTGCCCGGCTACTTTTACTATCAACAACAGGAGACTAC
GCCATCAACACCTCTGCGCTATCCTCAATCTCAAATTCCACCTCAACTTC
AGCCATATCCACAAAGGAATCCGGAATTGGAGACCAGCGATTCGGGTCGC
GATGAGGAGCAAGTGGTCCAAATTGGCGGCAGTCGCTCATTGGCCACAAA
TAACTATCTAAATACGTACAATAATAAGGAGAATTTCTATGAACCCGCTC
AGCCCTGGAGGCGTCGTGATTACCAGGCCAAATATGCCCAACATTTTGCC
GAATATTTGCGTAAATATCCAAGACGCCTGCAGCCAGTTTACAACACCAA
CGAGGATTTTGTTGAAAAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAAATCATAAATCATAATCATAATCATAAT
CACAACCTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAACGCCCGGCGGCACCGAGCGTTCCTGAACAATTCAGATGGAG
TTCTGAGGTCATTACTGGATCTATCACATGAGTCCAAGCGAGCTCGATTA
TCAATTACGCCCGGCCCTGCCACTCATCGGCAGTACTGTTGGTATTCATT
AAGCATTCTGCCGACATGGAAGCCATCACAAAACGGAAGATGAACCTGAA
TCGCCGGCGGCATCAGCACTTGTCGCTTGCGGTATAAAATTTGGCCAAGG
GGGAAAACGGGCGCGAAGAAAGTTGTTCATAATTTGGCACGTTAAATCAA
ACTGG
UFO04008.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:28:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14153-RA | 1022 | CG14153-RA | 7..725 | 1..718 | 3555 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:28:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10643656..10644318 | 56..718 | 3315 | 100 | Plus |
| 3L | 28110227 | 3L | 10643543..10643590 | 9..56 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:28:57 has no hits.
UFO04008.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:43 Download gff for
UFO04008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14153-RA | 2..720 | 1..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:33:49 Download gff for
UFO04008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14153-RA | 7..725 | 1..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:51 Download gff for
UFO04008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14153-RA | 7..725 | 1..718 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:51 Download gff for
UFO04008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10643534..10643590 | 1..56 | 96 | -> | Plus |
| 3L | 10643657..10644318 | 57..718 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:33:49 Download gff for
UFO04008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10636634..10636690 | 1..56 | 96 | -> | Plus |
| arm_3L | 10636757..10637418 | 57..718 | 100 | == | Plus |
