UFO04009.5prime Sequence
1110 bp (1021 high quality bases) assembled on 2009-02-13
> UFO04009.5prime
CAGTCGACATGAAGGCAAAAAAGAAGTTGGGCGTGGGATTGAGCCGCCAG
GAACGACAGGTGCTCGTCATCGGGGAGATCATTCAGGAGCTGCTGAAGGC
GCACGAAGCCAAAAAGGATGTAAACCTTAATCGGATGAAATCATTGGTGG
CCTCCAAATATGGACTGGACAGTTCGCCGCGCCTGGTCGACATAATTGCT
GCCGTGCCGCAGGACGCCAAAAAAATTCTGCTTCCAAAGCTGAGGGCAAA
GCCCATTCGCACAGCAAGTGGCATCGCCGTGGTCGCCGTCATGTGCAAGC
CGCATCGTTGTCCGCACATCAATATGACCGGCAATATATGCGTCTATTGT
CCCGGCGGACCGGACAGCGACTTTGAGTACTCGACACAGTCGTACACAGG
CTACGAGCCGACCTCGATGCGAGCCATCCGGTCGCGGTACGATCCTTTTC
TTCAGACCCGACACCGCGTTGAACAGCTGAAGCAGCTGGGACACAGTGTG
GACAAGGTGGAGTTCATCGTAATGGGCGGTACGTTCATGTGCCTGCCGGA
GGAGTACCGCGACTACTTTATCCGCAACCTACACGACGCCCTCTCCGGCC
ACAGCAGCGCCAATGTGGCGGAAGCCGTACGCTACTCGGAGAAGTCACGC
ACAAAGTGCATTGGCATCACCATAGAAACAAGGCCAGATTACTGCCTAAA
GCGGCACATATCGGATATGCTTAGCTATGGTTGCACCCGGCTGGAAATCG
GTGTGCAATCGGTTTACGAAGACGTGGCCAGGGATACGAACCGCGGGACA
CACGGTGCGAGCGGTGTGCGAGAGCTTCCAGCTGGGCAAGGATGCTGGCT
ATAAGATCGTGACGCACATGATGCCTGATCTTCCCAATGTTGACTTTGAA
CGCGACATCGAGCAGTTTATCGAGTACTTTGAGACCCTGCCTTCCGCTCT
GACGGCCTAAAGATCTATCCCACGGCTCGTCATTCGCGGCACTGGTCCTC
TACGAGTTATGGAAACGGGCGATATAGTCAATTCGCATCATGCTGGTGAC
TATGGGCGAAGATTTGCCTTGTACACACATGAAGCGATTACGCGTACGGC
GCGACATTTC
UFO04009.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Elp3-RA | 1863 | CG15433-RA | 80..1192 | 9..1108 | 4990 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4445193..4445933 | 273..1015 | 3520 | 99.5 | Plus |
| 2L | 23513712 | 2L | 4444894..4445136 | 30..272 | 1215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:13:45 has no hits.
UFO04009.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:02 Download gff for
UFO04009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elp3-RA | 73..1084 | 1..1015 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:08 Download gff for
UFO04009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elp3-RA | 73..1084 | 1..1015 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:54:06 Download gff for
UFO04009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elp3-RA | 73..1084 | 1..1015 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:54:06 Download gff for
UFO04009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4444895..4445136 | 31..272 | 100 | -> | Plus |
| 2L | 4445193..4445933 | 273..1015 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:08 Download gff for
UFO04009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4444895..4445136 | 31..272 | 100 | -> | Plus |
| arm_2L | 4445193..4445933 | 273..1015 | 99 | == | Plus |
