UFO04011.5prime Sequence
1122 bp (968 high quality bases) assembled on 2010-09-10
> UFO04011.5prime
CAGTCCACATGATGATGCAACGCACCCAGCTCCTGCTGCCCCTGGCCATG
GAGGCCACCATGCTGGCCCAGCAGCAGCGTGGCATGGCCACCCTGAAGAT
GATTTCCATCCGCCTGAAGTCGGTGAAGAACATTCAGAAAATTACGCAAT
CGATGAAGATGGTGTCCGCTGCCAAGTACGCTCGTGCCGAGCGAGACTTG
AAGGCGGCTCGTCCTTACGGCATCGGCGCCCAGCAGTTCTTCGAGAAGAC
GGAGATCCAGCCGGACGAGAAGGCGGAGCCCAAGAAGCTGCTCATCGCAG
TGACTTCGGACCGTGGTCTTTGCGGTGCCGTCCACACTGGTGTGGCCCGT
CTCATTCGCGGCGAACTGGCCCAGGACGAGGCCAACACTAAGGTGTTCTG
CGTGGGCGACAAGTCGCGCGCGATTCTGTCCCGTCTGTACGGCAAGAACA
TCCTGATGGTGGCCAACGAGGTGGGCCGACTGCCCCCCACTTTCCTGGAC
GCCTCGAAGATTGCCAACGAGGTTCTGCAGACCGGTTACGATTACACCGA
GGGCAAGATCGTGTACAACCGTTTCAAGTCGGTGGTGTCCTACCAGTGCT
CCACCCTCCCCATCTTCAGCGGATCCACCGTGGAGAAGTCGGAGAAGCTT
GCCGTCTACGACTCGCTCGACAGCGACGTGGTCAAGAGCTATCTGGAGTT
CTCGCTGGCCTCGCTCATCTTCTACACCATGAAGGAGGGCGCCTGCTCGG
AGCAGTCCTCCCGTATGACTGCCATGGACAACGCTTCCAAGAACGCCGGT
GAGATGATCGACAAGCTGACCCTCACCTTCAACCGTACCCGACAGGCGGT
CATCACTCGCGAGCTGATTTGAAATCATCTCCGGTGCCGCCGCCCTCACA
GCAAGCTTTCTAGACCATTCGTTTGGCGCGGCGGGCCCAGGTTAGTTGTC
ATAATCATAATCATAATCATAATCATAATCACAACTAGCCCTAGGAAGAT
CCTGGTCATGACTAATGGCTTTGAATTCCTACCAAATAAAAACGCTCGGG
CGCCAACCGACGTTCTGACAAGTCAGATGGGAATTCTGAAGTCATTACTG
AATCCTATCAACGGGAAGTCCA
UFO04011.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:29:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ATPsyn-gamma-RC | 1166 | CG7610-RC | 123..1013 | 9..900 | 4420 | 99.8 | Plus |
| ATPsyn-gamma-RB | 1395 | CG7610-RB | 363..1253 | 9..900 | 4420 | 99.8 | Plus |
| ATPsyn-gamma-RA | 1080 | CG7610-RA | 48..938 | 9..900 | 4420 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:29:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29747857..29748747 | 900..9 | 4395 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:29:11 has no hits.
UFO04011.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:47 Download gff for
UFO04011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATPsyn-gamma-RC | 96..991 | 9..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:33:59 Download gff for
UFO04011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATPsyn-gamma-RA | 48..943 | 9..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:59 Download gff for
UFO04011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATPsyn-gamma-RA | 48..943 | 9..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:59 Download gff for
UFO04011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29747852..29748747 | 9..906 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:33:59 Download gff for
UFO04011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25573574..25574469 | 9..906 | 99 | | Minus |
