UFO04012.5prime Sequence
1069 bp (-61 high quality bases) assembled on 2010-09-10
> UFO04012.5prime
CAGTCCCCATCCTATTTCAAATTCCTAATGATACTCATCCTGGGCTTTGG
CTTTATGTTCGTCTTTACCTTTTTCCAGACCATGTGTAACATCGAGAAAA
CCATACTGGATAGCATTTCCCAGGAAGATGATACCTTCAAGGGTGAGGGC
TACACCAGCCTGGCCATTATCTACCTGTTCTTCTCGCTCTCCAATTGGCT
GGCACCCTCGTTCATTTCGTTCACCGGACCACGAGTGGCCATGGTCGTGG
GAGCACTGACCTATACAGCCTTCATGATCACGTTCATGTTCCCGTCGACG
GTATTGCTGTACGTGGGCAGCGCAGTGCTGGGATTGGGTGCCTCGATCAC
TTGGACGGGACAGGGAACGTATCTGGCGCGCTGCAGTGAATCTTCCACGA
TTTCCCGTAACTCTGGCGTCTTCTGGGCCCTGCTGCAGTGCAGCATGTTC
ATTGGGAATCTGTTCGTGTACTATCAGTTCCAGGACAAGACCCGCATCGA
CAAGGAGACACGGAATCTGGTCATCGGCGTGCTCACGGTAATTGCTGTGC
TGGGCATCGTGTTTCTAGCCGCACTGAGATTCATGGCCGATAATGCCGAG
CACGACAACGAGCTGGAACAGAAGCACACGGGGCTGTGGACAGGCCATAT
ACGCATTTGAAGTCCGCAGGACAATTGTTCCTCACCAAAAAGATGCTGCT
CCTTAGTCTGGCCTTCTTTTAACAGGCCTGGAAGCTGTCATTCTTTAGCG
GAGTTTTTGGATCACGATTGGATTCACCACGAAAATAGCCGAAACACCGA
AAGAAATCGTTGGGCTGGTGGGCATTTGCATTGGAGCCGGCGAGGTCTTG
GGAGGAGGACTATTCGGCATACTGGGCACCAAGACGACGAGATATGGACC
GCGATCCCATCGTGATGCCGGCTATGTGATGCACATGGCAGCCCTTCTCA
TGACGTTCATCACCTGCCGAACAGTGCACCGTTTAAGATACCACGAATTT
ATCTATCTGGACCCGCCCCGAGCAGCATCCGCTTGGGTGTGTGCCCTTCC
TTTTGGGCCTGAGCGAATG
UFO04012.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:29:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18549-RA | 2004 | CG18549-RA | 348..1401 | 14..1066 | 4690 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:29:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12454885..12455337 | 267..721 | 2160 | 99.3 | Plus |
| 3R | 32079331 | 3R | 12455416..12455752 | 733..1066 | 1045 | 92 | Plus |
| 3R | 32079331 | 3R | 12454642..12454813 | 95..266 | 860 | 100 | Plus |
| 3R | 32079331 | 3R | 12449643..12449725 | 14..96 | 355 | 95.2 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:29:08 has no hits.
UFO04012.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:47 Download gff for
UFO04012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18549-RA | 344..1403 | 9..1069 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:33:56 Download gff for
UFO04012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18549-RA | 344..1403 | 9..1069 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:57 Download gff for
UFO04012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18549-RA | 344..1403 | 9..1069 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:57 Download gff for
UFO04012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12455410..12455754 | 726..1069 | 93 | | Plus |
| 3R | 12449639..12449725 | 9..96 | 92 | -> | Plus |
| 3R | 12454644..12454813 | 97..266 | 100 | -> | Plus |
| 3R | 12454885..12455342 | 267..725 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:33:56 Download gff for
UFO04012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8275361..8275447 | 9..96 | 92 | -> | Plus |
| arm_3R | 8280366..8280535 | 97..266 | 100 | -> | Plus |
| arm_3R | 8280607..8281064 | 267..725 | 99 | -> | Plus |
| arm_3R | 8281132..8281476 | 726..1069 | 93 | | Plus |
