UFO04013.5prime Sequence
1096 bp (905 high quality bases) assembled on 2010-09-10
> UFO04013.5prime
CAGTCGACATGTCACGCAGCCATCAGCGACCAAATCTTGGTCTGGTCGAT
GCACCGCCTAATGATCATGTCGAAGAATATGTAGTGGAGAAGTCTTAGGC
AAACGGTTTGTTAATGGGCGTCCCCAGGTTCTGGTGAAGTGGAGCGGTTT
TCCGAACGAGAACAACACCTGGGAACCATTGGAAAACGTAGGCAACTGCA
TGAAGCTGGTCTCCGACTTCGAGTCGGAGGTCTTCAGGCTGCATCGGAAG
GCCGCGGCTAAATCTGTCGGGAAATCGAAGTCAAGTCCTAGCAGCAGCGG
TCCATTGATCACCGAGAATGGCCCCAGCAGCTCTAAGAAAACACAACAAC
ATTCCAAGTCGGTGCAGGCAAAATACCCCCCCGGAATGTCGAAGATGAAT
CAGAAAAAAGGAAAGAATATTAAGAAAACGGCGGGAAAAATCAAAGATAT
TGAAAATTATCCCAAAACTCAGATGCCTAGTACTAGCCAAGTCTCCACAG
ATTCAACTGAAGTTTTCGACGGCAATCCATCAGCCACAACGACGAACATG
ATTAAGAGTCCCAGGATTCAAAGCCTTTTCAGTGATCTGAACTTGATCGA
ACCCACTAAAGACAAAGATGTGGGGGACACATCTTTAAAAACGCCTCCCA
AATCGCGCCGGCTTATTGAATTTCCTCAACGGGAAGACGCACCATTGTCT
TTCGAAACATGTGTCTCCTATGCTGATTCGTAAAGAATCCCAACCATTGC
AGAGCTCATGTACTGATGATTCGGATTTGGGTGAATCCTCTTCCAGTATG
TCGCTTCCTACAGTATCATCGACCAGCTCTGAGAAATCGATCAAGGTCAC
CAAATCGGAACCTAAAACGCTCGGCCAGATAAAGTTTCGTCTAGGTCATC
GGATGGTGTCATGCGGCTTCATCGCTGGGCGCACCAAAGGATGGGGACAT
GGCTTGGATTTATCTGGCAGTGATTCCAATGGAATCGAATTGCAGAGCAT
GCCGCCGGCTGTCCGCGCCGTAGCGTAAAAAACTTACCCGGAATGGAAAT
TCCCGGAAATGACGAAGCCTTCGGTGTTAATCGCGGAACTGGATCG
UFO04013.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:28:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rhi-RA | 1570 | CG10683-RA | 41..1130 | 9..1095 | 4865 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:28:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17632504..17633476 | 978..9 | 4455 | 98.4 | Minus |
| 2R | 25286936 | 2R | 17632144..17632205 | 1087..1027 | 200 | 91.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:28:51 has no hits.
UFO04013.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:41 Download gff for
UFO04013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rhi-RA | 38..1127 | 9..1096 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:33:46 Download gff for
UFO04013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rhi-RA | 41..1130 | 9..1096 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:48 Download gff for
UFO04013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rhi-RA | 41..1130 | 9..1096 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:48 Download gff for
UFO04013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17632484..17633476 | 9..998 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:33:46 Download gff for
UFO04013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13519989..13520981 | 9..998 | 97 | | Minus |
