UFO04014.5prime Sequence
1107 bp (986 high quality bases) assembled on 2009-02-13
> UFO04014.5prime
CAGTCGACATGAAGCTGAGCTTAGGATTATTTGTGATCTTCGCCGCTTTG
ATCGGCTTCACGTCGTCCACGGATGTGAGTCAGTGCCCGAAATCCAAATC
GAAGGCCCTAGCTGCCGGTGACGTCTCCATTTCCAATTGCCCCAAGAGCA
AGTGCATCCTGAAGCGCAACACGGAGGCCAGCATTCAGATGAAGATCCGG
CCGGAGCGCGACTTCCAGGAGCTGACCTCCGACATCCAGGGCATTATCCT
GGACGTGCCGCTGCCGTTCCCAGGATATTACGGCACCAGCGCCTGTCCGC
ACATCTACGACGAGGCTGGCGAGAAGAAGGTGGGCTGCCCACTGAAGGCC
GGCCAGGTGTACACCTACAAGAACAGCTTCAAGATCCTGCCCGTCTACCC
GACCGTCAGTTTGGAGATCCACTGGGGATTGGGCGATAAGCATGGGGATG
CGGCCTGCTTCCAGATACCCGCCAAAATCAAGGCTGCAAGCTTTCTAGAC
CATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAA
TCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGC
TTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAAC
AAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCC
AAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTAC
TGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGC
ATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTAT
ATATTTGCCCATGGTGAAACGGGGGCGAAGAAGTTGTCCATATTGCCACG
TTTAAATCAAACTGATGAACTCACCCAGGGATTGCTGAGACGAAAACATA
TCTCATAACCTTAGGGAATAGCCAGTTTTCACCGTACACGCACATCTTGC
GAATTATGTGTAGAACTGCGAATCGTCTGGTATTCCTCCAGAGCGATAAA
CCGTTCCGGTTGCCATGAAACGGGCTACAGGTGAACGTTCCCATACCAGA
TACGGCT
UFO04014.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Npc2b-RA | 839 | CG3153-RA | 138..614 | 9..485 | 2385 | 100 | Plus |
| Npc2b-RB | 804 | CG3153-RB | 103..579 | 9..485 | 2385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14091809..14092200 | 94..485 | 1960 | 100 | Plus |
| 3R | 32079331 | 3R | 14091317..14091401 | 9..93 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:45:29 has no hits.
UFO04014.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:57 Download gff for
UFO04014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3153-RA | 119..605 | 1..489 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:24 Download gff for
UFO04014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2b-RB | 96..582 | 1..489 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:28:03 Download gff for
UFO04014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2b-RB | 96..582 | 1..489 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:28:03 Download gff for
UFO04014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14091310..14091401 | 1..93 | 96 | -> | Plus |
| 3R | 14091809..14092200 | 94..485 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:24 Download gff for
UFO04014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9917032..9917123 | 1..93 | 96 | -> | Plus |
| arm_3R | 9917531..9917922 | 94..485 | 100 | == | Plus |
