UFO04020.5prime Sequence
1186 bp (1077 high quality bases) assembled on 2010-09-10
> UFO04020.5prime
CAGTCGACATGGCTGATCCACGCATTACTCTCGGCCTCGGCCTGCTAATC
TTTGGCCTGATCCTCTCCGCGGAAGCCTCGCCACAAGGTCGCATTCTTGG
CGGCGAGGACGTTGCCCAGGGCGAGTACCCCTGGTCCGCATCCGTGAGAT
ACAACAAGGCCCACGTCTGCTCCGGCGCCATCATCTCAACAAACCACATC
CTGACCGCCGCCCACTGTGTGTCCAGCGTGGGCATCACCCCAGTGGATGC
CAGCACCTTGGCTGTTCGCCTGGGCACCATTAACCAGTACGCCGGCGGCA
GCATTGTGAATGTAAAGAGCGTGATCATCCATCCATCGTACGGAAACTTC
CTGCACGACATCGCCATACTGGAGCTGGACGAGACCCTGGTCTTTAGCGA
TCGCATCCAAGACATCGCACTGCCCCCCACAACTGATGAGGAGACGGAAG
ATGTGGACGCTGAGCTGCCCAACGGAACTCCGGTCTATGTGGCTGGATGG
GGTGAACTTTCGGATGGTACTGCATCCTATAAACAGCAGAAGGCCAACTA
CAATACGCTGAGCCGATCCCTGTGCGAATGGGAAGCCGGATACGGCTACG
AATCCGTCGTCTGCCTCTCGAGAGCCGAAGGCGAGGGCATCTGTCGTGGG
GATGCCGGTGCGGCTGTCATCGATGACGACAAGGTGCTTCGCGGTTTGAC
CAGCTTCAACTTCGGACCCTGCGGCAGCAAGTATCCGGATGTGGCCACCC
GTGTCTCCTACTACCTAACCTGGATCGAGGCCAATACCCAGGCAAGCTTT
CTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGCATGACT
AGTGCTTGGATTCTCACCATAAAAACGCCCGGCGGCAACCGAGCGTTCTG
AACAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGT
CCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGGCACTCATCGCAGT
ACTGTTGTTATTCATTAGCATTCTGGCGGCCTGGCGCCATTCCCAAAACG
GCAAGAATGAACCTGAATCCGCCAGCGCAATCGAGACCTTGTCGCCTTGG
CTAATTATTTTGCCCAATGGTGAAACCGGGGGCAGA
UFO04020.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:28:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9673-RB | 978 | CG9673-RB | 18..805 | 4..791 | 3910 | 99.7 | Plus |
| CG9673-RA | 891 | CG9673-RA | 18..805 | 4..791 | 3910 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:28:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16702959..16703508 | 791..242 | 2735 | 99.8 | Minus |
| X | 23542271 | X | 16703630..16703867 | 241..4 | 1175 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:28:45 has no hits.
UFO04020.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:39 Download gff for
UFO04020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9673-RA | 11..809 | 1..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:33:42 Download gff for
UFO04020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9673-RA | 16..814 | 1..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:43 Download gff for
UFO04020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9673-RA | 16..814 | 1..800 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:43 Download gff for
UFO04020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16702950..16703508 | 242..800 | 99 | <- | Minus |
| X | 16703630..16703869 | 1..241 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:33:42 Download gff for
UFO04020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16596983..16597541 | 242..800 | 99 | <- | Minus |
| arm_X | 16597663..16597902 | 1..241 | 99 | | Minus |
