UFO04021.5prime Sequence
1128 bp (1039 high quality bases) assembled on 2009-02-13
> UFO04021.5prime
CAGTCGACATGTTGAAGATCGTGATCCTCTTGTCCGCCGTGGTCTGCGCC
CTGGGAGGCACCGTCCCTGAGGGACTCCTGCCTCAGTTGGATGGCCGCAT
TGTCGGCGGCTCTGCTACCACCATCAGCAGCTTCCCCTGGCAGATCTCCC
TGCAGCGCAGTGGCAGCCACTCCTGCGGTGGATCCATCTACTCTGCCAAC
ATCATTGTGACCGCCGCTCACTGTCTGCAGTCCGTGTCCGCTTCAGTCCT
GCAGGTCCGTGCTGGATCCACCTACTGGAGCTCTGGTGGCGTCGTCGCCA
AGGTTTCCTCTTTCAAGAACCACGAGGGATACAACGCTAACACCATGGTC
AACGACATCGCTGTCATCCGTCTGAGCTCTTCCCTGAGCTTCAGCTCAAG
CATCAAGGCTATTAGCCTGGCCACTTACAACCCAGCTAACGGAGCCTCTG
CCGCCGTTTCCGGTTGGGGTACCCAGTCGTCCGGATCCAGCTCCATCCCC
TCCCAGCTGCAGTACGTGAACGTGAACATCGTTAGCCAGAGCCAGTGTGC
TTCCTCCACCTACGGATACGGTAGCCAGATCCGCAACACCATGATCTGCG
CTGCTGCCAGCGGCAAGGATGCCTGCCAGGGTGACTCCGGTGGCCCACTG
GTCTCCGGCGGAGTCCTCGTCGGTGTTGTCTCCTGGGGATACGGATGCGC
TTACTCCAACTACCCCGGTGTCTATGCCGATGTTGCTGTCCTCCGCTCTT
GGGTGGTGAGCACTGCTAACAGCATCGCAAGCTTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCA
TAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCT
CACCAATAAAAAACGCCCGGCGGCACCGAGCGTTCTGAACAAATCCAGAT
GGAGTTCTGAGGTCATTACTGGATCTTATCAACAGGAGTCCAAGCGAGCT
CGAATATCAAATTACGGCCCCGCCTGCCACTCATCGCAGTACTGTTTGTA
ATCCATAAGCATTCTGCGACATGCAGCACTACCAAACGCGCAGGATGGAC
CTGATCCGCGAGAGCGGCATACGAGCAC
UFO04021.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaTry-RA | 860 | CG18444-RA | 27..795 | 8..776 | 3845 | 100 | Plus |
| CG30025-RA | 810 | CG30025-RA | 14..761 | 8..755 | 2645 | 90.2 | Plus |
| gammaTry-RA | 810 | CG30028-RA | 15..761 | 8..754 | 2640 | 90.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11344325..11345093 | 776..8 | 3845 | 100 | Minus |
| 2R | 25286936 | 2R | 11353613..11354360 | 755..8 | 2645 | 90.2 | Minus |
| 2R | 25286936 | 2R | 11349110..11349856 | 754..8 | 2640 | 90.2 | Minus |
| 2R | 25286936 | 2R | 11350826..11351572 | 8..754 | 2640 | 90.2 | Plus |
| 2R | 25286936 | 2R | 11355332..11356078 | 8..754 | 2640 | 90.2 | Plus |
| 2R | 25286936 | 2R | 11346341..11347088 | 8..755 | 2390 | 88 | Plus |
| 2R | 25286936 | 2R | 11345320..11345442 | 736..614 | 300 | 82.9 | Minus |
| 2R | 25286936 | 2R | 11345694..11346016 | 362..40 | 250 | 71.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:18:01 has no hits.
UFO04021.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:54:49 Download gff for
UFO04021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTry-RA | 16..801 | 1..788 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:17 Download gff for
UFO04021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTry-RA | 20..805 | 1..788 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:56:35 Download gff for
UFO04021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTry-RA | 20..805 | 1..788 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:56:35 Download gff for
UFO04021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11344315..11345096 | 1..788 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:17 Download gff for
UFO04021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7231820..7232601 | 1..788 | 98 | | Minus |
