UFO04022.5prime Sequence
1116 bp (962 high quality bases) assembled on 2010-09-10
> UFO04022.5prime
CAGTCGACATGGGTCGCGTTATTCGTGCACAGCGTAAGGGAGCTGGTTCC
GTGTTCAAGGCGCACGTGAAGAAGCGCAAGGGAGCCGCCAAGCTGCGTTC
CCTGGACTTCGCCGAGCGTTCCGGCTACATCCGCGGAGTTGTCAAGGACA
TCATCCACGATCCCGGCCGTGGCGCTCCTCTGGCCGTCGTCCACTTCCGC
GACCCCTACCGCTACAAGATCCGCAAGGAGCTGTTCATCGCCCCCGAGGG
CATGCACACCGGCCAGTTCGTGTACTGCGGCCGCAAGGCCACCCTTCAGA
TCGGCAACGTGATGCCCCTCAGCCAGATGCCCGAGGGTACCATCATCTGC
AACCTGGAGGAGAAGACCGGTGATCGCGGCCGTTTGGCCCGCACCTCTGG
CAACTACGCCACCGTGATTGCCCACAACCAGGACACCAAGAAGACGCGTG
TCAAGCTGCCATCCGGCGCCAAGAAGGTCGTGCCCTCGGCCAACCGCGCC
ATGGTTGGCATCGTCGCCGGCGGCGGTCGTATCGACAAGCCCATCCTGAA
GGCCGGTCGTGCCTACCACAAGTACAAGGTGAAGCGCAACAGCTGGCCTA
AGGTGCGTGGTGTGGCCATGAACCCCGTGGAGCATCCTCACGGTGGTGGT
AACCATCAGCACATTGGTAAGGCCTCCACCGTCAAGCGAGGCACATCCGC
CGGTCGCAAGGTCGGTCTCATCGCTGCCCGTCGTACCGGTAGGATCCGTG
GTGGCAAGGGCGACAGCAAGGACAAGGCAAGCTTTTCTAGACCATTCGTT
TGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATTAATCATAAT
CATAATCACAACTAGCCCTAGGAGATCCTGGTCATGACTAGTGCTTGGAT
TCCTCACCAATAAAAACGGCCCGGGCGGCAACCGAGCGTTCTGAACAATC
CAGATGAAGTTCTGGAGGTCATTACTGGATCTATCAACCAGGAGTCCAAA
GCCGAGCTACGATTATCAAATACGCCCCCGCCCTGCCCACCTCATCGCAG
TACTGTTGGATTCATTAGCCATCTTGCCGACATGGGAAGCCATCCCAACA
GCATGAAGAACCCTGA
UFO04022.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:28:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL8-RB | 1173 | CG1263-RB | 236..1003 | 9..776 | 3840 | 100 | Plus |
| RpL8-RA | 998 | CG1263-RA | 61..828 | 9..776 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:28:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2588082..2588713 | 145..776 | 3160 | 100 | Plus |
| 3L | 28110227 | 3L | 2587753..2587891 | 9..147 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:28:54 has no hits.
UFO04022.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:42 Download gff for
UFO04022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL8-RB | 208..986 | 1..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:33:48 Download gff for
UFO04022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL8-RA | 57..834 | 1..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:49 Download gff for
UFO04022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL8-RA | 57..834 | 1..783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:49 Download gff for
UFO04022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2587748..2587890 | 1..146 | 97 | -> | Plus |
| 3L | 2588084..2588719 | 147..783 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:33:48 Download gff for
UFO04022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2587748..2587890 | 1..146 | 97 | -> | Plus |
| arm_3L | 2588084..2588719 | 147..783 | 99 | == | Plus |
